Recent advances in predicting protein–protein interactions with the aid of artificial intelligence algorithms

S Li, S Wu, L Wang, F Li, H Jiang, F Bai - Current Opinion in Structural …, 2022 - Elsevier
Protein–protein interactions (PPIs) are essential in the regulation of biological functions and
cell events, therefore understanding PPIs have become a key issue to understanding the …

[HTML][HTML] Machine learning for drug repositioning: Recent advances and challenges

L Cai, J Chu, J Xu, Y Meng, C Lu, X Tang… - Current Research in …, 2023 - Elsevier
Because translating the growing body of knowledge about human disease into treatments
has been slower than expected, the application of machine learning techniques to drug …

MARPPI: boosting prediction of protein–protein interactions with multi-scale architecture residual network

X Li, P Han, W Chen, C Gao, S Wang… - Briefings in …, 2023 - academic.oup.com
Protein–protein interactions (PPIs) are a major component of the cellular biochemical
reaction network. Rich sequence information and machine learning techniques reduce the …

DCSE: Double-Channel-Siamese-Ensemble model for protein protein interaction prediction

W Chen, S Wang, T Song, X Li, P Han, C Gao - BMC genomics, 2022 - Springer
Background Protein-protein interaction (PPI) is very important for many biochemical
processes. Therefore, accurate prediction of PPI can help us better understand the role of …

Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context

V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …

Predicting Herb-Disease Associations through Graph Convolutional Network

X Hu, Y Lu, G Tian, P Bing, B Wang… - Current …, 2023 - ingentaconnect.com
Background: In recent years, herbs have become very popular worldwide as a form of
complementary and alternative medicine (CAM). However, there are many types of herbs …

A many‐objective optimization‐based local tensor factorization model for skin cancer detection

H Zhao, J Wen, J Yang, X Cai… - … and Computation: Practice …, 2024 - Wiley Online Library
Exploring the associations between microRNAs (miRNAs) and diseases can identify
potential disease features. Prediction of miRNA‐skin cancer associations has become an …

Evaluating Large Language Models for Predicting Protein Behavior under Radiation Exposure and Disease Conditions

R Engel, G Park - Proceedings of the 23rd Workshop on …, 2024 - aclanthology.org
The primary concern with exposure to ionizing radiation is the risk of developing diseases.
While high doses of radiation can cause immediate damage leading to cancer, the effects of …

[PDF][PDF] Deep learning of proteomics data

M Lennox - 2021 - pure.qub.ac.uk
Next-generation sequencing technology has propelled the field of biology into the big data
era, and continual advancements in computing have now made it easier to explore complex …

Improving protein-protein interaction prediction by incorporating 3D genome information

Z Guo, K Su, L Liu, X Su, M Feng, S Cao… - … and Applications: 17th …, 2021 - Springer
Numerous computational methods have been proposed to predict protein-protein
interactions, none of which however, considers the original DNA loci of the interacting …