Advances and challenges in cell biology for cultured meat

B Martins, A Bister, RGJ Dohmen… - Annual review of …, 2024 - annualreviews.org
Cultured meat is an emerging biotechnology that aims to produce meat from animal cell
culture, rather than from the raising and slaughtering of livestock, on environmental and …

Extracellular matrix: Brick and mortar in the skeletal muscle stem cell niche

SC Schüler, Y Liu, S Dumontier… - Frontiers in Cell and …, 2022 - frontiersin.org
The extracellular matrix (ECM) is an interconnected macromolecular scaffold occupying the
space between cells. Amongst other functions, the ECM provides structural support to …

Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution

B Li, W Zhang, C Guo, H Xu, L Li, M Fang, Y Hu… - Nature …, 2022 - nature.com
Spatial transcriptomics approaches have substantially advanced our capacity to detect the
spatial distribution of RNA transcripts in tissues, yet it remains challenging to characterize …

Spatial mapping of the total transcriptome by in situ polyadenylation

DW McKellar, M Mantri, MM Hinchman… - Nature …, 2023 - nature.com
Spatial transcriptomics reveals the spatial context of gene expression, but current methods
are limited to assaying polyadenylated (A-tailed) RNA transcripts. Here we demonstrate that …

Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis

G Coulis, D Jaime, C Guerrero-Juarez… - Science …, 2023 - science.org
Macrophages are essential for skeletal muscle homeostasis, but how their dysregulation
contributes to the development of fibrosis in muscle disease remains unclear. Here, we used …

Integration mapping of cardiac fibroblast single-cell transcriptomes elucidates cellular principles of fibrosis in diverse pathologies

R Patrick, V Janbandhu, V Tallapragada, SSM Tan… - Science …, 2024 - science.org
Single-cell technology has allowed researchers to probe tissue complexity and dynamics at
unprecedented depth in health and disease. However, the generation of high-dimensionality …

[HTML][HTML] The neuroendocrine transition in prostate cancer is dynamic and dependent on ASCL1

R Romero, T Chu, TJ González Robles, P Smith, Y Xie… - Nature Cancer, 2024 - nature.com
Lineage plasticity is a hallmark of cancer progression that impacts therapy outcomes, yet the
mechanisms mediating this process remain unclear. Here, we introduce a versatile in vivo …

[PDF][PDF] Single-nucleus profiling unveils a geroprotective role of the FOXO3 in primate skeletal muscle aging

Y Jing, Y Zuo, Y Yu, L Sun, Z Yu, S Ma, Q Zhao… - Protein & …, 2023 - academic.oup.com
Age-dependent loss of skeletal muscle mass and function is a feature of sarcopenia, and
increases the risk of many aging-related metabolic diseases. Here, we report phenotypic …

DeepVelo: Single-cell transcriptomic deep velocity field learning with neural ordinary differential equations

Z Chen, WC King, A Hwang, M Gerstein, J Zhang - Science Advances, 2022 - science.org
Recent advances in single-cell sequencing technologies have provided unprecedented
opportunities to measure the gene expression profile and RNA velocity of individual cells …

A growth factor–expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15

A Patsalos, L Halasz, MA Medina-Serpas… - Journal of Experimental …, 2021 - rupress.org
Muscle regeneration is the result of the concerted action of multiple cell types driven by the
temporarily controlled phenotype switches of infiltrating monocyte–derived macrophages …