Next‐generation technologies and data analytical approaches for epigenomics
Epigenetics refers to the collection of heritable features that modulate the genome–
environment interaction without being encoded in the actual DNA sequence. While being …
environment interaction without being encoded in the actual DNA sequence. While being …
Decoding the non-coding: tools and databases unveiling the hidden world of “junk” RNAs for innovative therapeutic exploration
U Chaudhary, S Banerjee - ACS Pharmacology & Translational …, 2024 - ACS Publications
Non-coding RNAs are pivotal regulators of gene and protein expression, exerting crucial
influences on diverse biological processes. Their dysregulation is frequently implicated in …
influences on diverse biological processes. Their dysregulation is frequently implicated in …
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
Abstract The 1.5 Gbp/2C genome of pedunculate oak (Quercus robur) has been sequenced.
A strategy was established for dealing with the challenges imposed by the sequencing of …
A strategy was established for dealing with the challenges imposed by the sequencing of …
SRD: a Staphylococcus regulatory RNA database
M Sassi, Y Augagneur, T Mauro, L Ivain… - Rna, 2015 - rnajournal.cshlp.org
An overflow of regulatory RNAs (sRNAs) was identified in a wide range of bacteria. We
designed and implemented a new resource for the hundreds of sRNAs identified in …
designed and implemented a new resource for the hundreds of sRNAs identified in …
Analysis of the biodegradative and adaptive potential of the novel polychlorinated biphenyl degrader Rhodococcus sp. WAY2 revealed by its complete genome …
D Garrido-Sanz, P Sansegundo-Lobato… - Microbial …, 2020 - microbiologyresearch.org
The complete genome sequence of Rhodococcus sp. WAY2 (WAY2) consists of a circular
chromosome, three linear replicons and a small circular plasmid. The linear replicons …
chromosome, three linear replicons and a small circular plasmid. The linear replicons …
Genome Analysis of Carbaryl-Degrading Strain Pseudomonas putida XWY-1
S Zhu, H Wang, W Jiang, Z Yang, Y Zhou, J He… - Current …, 2019 - Springer
Carbaryl was a widely used pesticide in the agriculture industry. The toxicity against non-
target organisms and the environmental pollution it caused became the focus of public …
target organisms and the environmental pollution it caused became the focus of public …
Transcriptome sequencing reveals wide expression reprogramming of basal and unknown genes in Leptospira biflexa biofilms
The genus Leptospira is composed of pathogenic and saprophytic spirochetes. Pathogenic
Leptospira is the etiological agent of leptospirosis, a globally spread neglected disease. A …
Leptospira is the etiological agent of leptospirosis, a globally spread neglected disease. A …
Comparative Genomics of H. pylori and Non‐Pylori Helicobacter Species to Identify New Regions Associated with Its Pathogenicity and Adaptability
DM Cao, QF Lu, SB Li, JP Wang… - BioMed Research …, 2016 - Wiley Online Library
The genus Helicobacter is a group of Gram‐negative, helical‐shaped pathogens consisting
of at least 36 bacterial species. Helicobacter pylori (H. pylori), infecting more than 50% of the …
of at least 36 bacterial species. Helicobacter pylori (H. pylori), infecting more than 50% of the …
Mycoplasma non-coding RNA: identification of small RNAs and targets
FM Siqueira, GL de Morais, S Higashi, LS Beier… - BMC genomics, 2016 - Springer
Abstract Background Bacterial non-coding RNAs act by base-pairing as regulatory elements
in crucial biological processes. We performed the identification of trans-encoded small …
in crucial biological processes. We performed the identification of trans-encoded small …
Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome
RL Dineen, F Bottacini… - Microbial …, 2024 - Wiley Online Library
The 190 kb megaplasmid pMP7017 of Bifidobacterium breve JCM7017 represents the first
conjugative and largest plasmid characterised within this genus to date. In the current study …
conjugative and largest plasmid characterised within this genus to date. In the current study …