Enabling Real World Scale Structural Superlubricity All-Atom Simulation on the Next-Generation Sunway Supercomputer

X Duan, J Wang, P Gao, M Ma, L Gan, X Liu… - Proceedings of the …, 2023 - dl.acm.org
Molecular dynamics (MD) simulation can provide an affordable way for inspecting
microscopic phenomena, which is a powerful complement to real-world experiments. But the …

Scaling Molecular Dynamics with ab initio Accuracy to 149 Nanoseconds per Day

J Li, B Li, Z Guo, M Li, E Li, L Liu, G Yuan… - … Conference for High …, 2024 - ieeexplore.ieee.org
Physical phenomena such as chemical reactions, bond breaking, and phase transition
require molecular dynamics (MD) simulation with ab initio accuracy ranging from …

Enhance the Strong Scaling of LAMMPS on Fugaku

J Li, T Zhao, Z Guo, S Shi, L Liu, G Tan, W Jia… - Proceedings of the …, 2023 - dl.acm.org
Physical phenomenon such as protein folding requires simulation up to microseconds of
physical time, which directly corresponds to the strong scaling of molecular dynamics (MD) …

Bio-esmd: A data centric implementation for large-scale biological system simulation on sunway taihulight supercomputer

X Duan, Q Shao, J Weng, B Schmidt… - … on Parallel and …, 2023 - ieeexplore.ieee.org
Molecular dynamics (MD) simulations of biological systems are playing an increasingly
important role in the research of pathogens and drugs. Most MD methods for biological …

Multi-level Load Balancing Strategies for Massively Parallel Smoothed Particle Hydrodynamics Simulation

Y Zhang, Z Zhang, Y Zhao, J Chen, H An… - Proceedings of the 53rd …, 2024 - dl.acm.org
In the field of computational fluid dynamics, Smoothed Particle Hydrodynamics (SPH) serves
as a powerful tool for investigating complex fluid interactions and instabilities. For the …