Immunotherapy for colorectal cancer: insight from inherited genetics

NP Tjader, AE Toland - Trends in Cancer, 2024 - cell.com
Immunotherapy shows efficacy for multiple cancer types and potential for expanded use.
However, current immune checkpoint inhibitors (ICIs) are ineffective against microsatellite …

Small molecule tractable PARP inhibitors: Scaffold construction approaches, mechanistic insights and structure activity relationship

A Thakur, M Rana, J Mathew, S Nepali, CH Pan… - Bioorganic …, 2023 - Elsevier
Diverse drug design strategies viz. molecular hybridization, substituent installation, scaffold
hopping, isosteric replacement, high-throughput screening, induction and separation of …

Proteogenomic analysis of human cerebrospinal fluid identifies neurologically relevant regulation and implicates causal proteins for Alzheimer's disease

D Western, J Timsina, L Wang, C Wang, C Yang… - Nature Genetics, 2024 - nature.com
The integration of quantitative trait loci (QTLs) with disease genome-wide association
studies (GWASs) has proven successful in prioritizing candidate genes at disease …

Integrative single-cell analysis of human colorectal cancer reveals patient stratification with distinct immune evasion mechanisms

X Chu, X Li, Y Zhang, G Dang, Y Miao, W Xu, J Wang… - Nature Cancer, 2024 - nature.com
The tumor microenvironment (TME) considerably influences colorectal cancer (CRC)
progression, therapeutic response and clinical outcome, but studies of interindividual …

[HTML][HTML] Proteogenomic analysis of human cerebrospinal fluid identifies neurologically relevant regulation and informs causal proteins for Alzheimer's disease

C Cruchaga, D Western, J Timsina, L Wang… - Research …, 2023 - ncbi.nlm.nih.gov
The integration of quantitative trait loci (QTL) with disease genome-wide association studies
(GWAS) has proven successful at prioritizing candidate genes at disease-associated loci …

CustOmics: A versatile deep-learning based strategy for multi-omics integration

H Benkirane, Y Pradat, S Michiels… - PLoS Computational …, 2023 - journals.plos.org
The availability of patient cohorts with several types of omics data opens new perspectives
for exploring the disease's underlying biological processes and developing predictive …

Fine-mapping analysis including over 254,000 East Asian and European descendants identifies 136 putative colorectal cancer susceptibility genes

Z Chen, X Guo, R Tao, JR Huyghe, PJ Law… - Nature …, 2024 - nature.com
Genome-wide association studies (GWAS) have identified more than 200 common genetic
variants independently associated with colorectal cancer (CRC) risk, but the causal variants …

Plasma metabolites and risk of seven cancers: a two-sample Mendelian randomization study among European descendants

Y Chen, Y Xie, H Ci, Z Cheng, Y Kuang, S Li, G Wang… - BMC medicine, 2024 - Springer
Background While circulating metabolites have been increasingly linked to cancer risk, the
causality underlying these associations remains largely uninterrogated. Methods We …

Novel insights into genetic susceptibility for colorectal cancer from transcriptome-wide association and functional investigation

Z Chen, W Song, XO Shu, W Wen… - JNCI: Journal of the …, 2024 - academic.oup.com
Background Transcriptome-wide association studies have been successful in identifying
candidate susceptibility genes for colorectal cancer (CRC). To strengthen susceptibility gene …

Plasma proteomic and polygenic profiling improve risk stratification and personalized screening for colorectal cancer

J Sun, Y Liu, J Zhao, B Lu, S Zhou, W Lu, J Wei… - Nature …, 2024 - nature.com
This study aims to identify colorectal cancer (CRC)-related proteomic profiles and develop a
prediction model for CRC onset by integrating proteomic profiles with genetic and non …