Playing with the molecules of life

DD Young, PG Schultz - ACS chemical biology, 2018 - ACS Publications
Our understanding of the complex molecular processes of living organisms at the molecular
level is growing exponentially. This knowledge, together with a powerful arsenal of tools for …

Cracking the code: Reprogramming the genetic script in prokaryotes and eukaryotes to harness the power of noncanonical amino acids

C Jann, S Giofré, R Bhattacharjee, EA Lemke - Chemical Reviews, 2024 - ACS Publications
Over 500 natural and synthetic amino acids have been genetically encoded in the last two
decades. Incorporating these noncanonical amino acids into proteins enables many …

Virus-assisted directed evolution of enhanced suppressor tRNAs in mammalian cells

D Jewel, RE Kelemen, RL Huang, Z Zhu… - Nature …, 2023 - nature.com
Site-specific incorporation of unnatural amino acids (Uaas) in living cells relies on
engineered aminoacyl-transfer RNA synthetase–tRNA pairs borrowed from a distant domain …

Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology

W Niu, J Guo - Chemical Reviews, 2024 - ACS Publications
Over the past two decades, genetic code expansion (GCE)-enabled methods for
incorporating noncanonical amino acids (ncAAs) into proteins have significantly advanced …

Multiplex suppression of four quadruplet codons via tRNA directed evolution

EA DeBenedictis, GD Carver, CZ Chung, D Söll… - Nature …, 2021 - nature.com
Genetic code expansion technologies supplement the natural codon repertoire with
assignable variants in vivo, but are often limited by heterologous translational components …

Genetic encoding of three distinct noncanonical amino acids using reprogrammed initiator and nonsense codons

JM Tharp, O Vargas-Rodriguez, A Schepartz… - ACS chemical …, 2021 - ACS Publications
We recently described an orthogonal initiator tRNA (i tRNATy2) that can initiate protein
synthesis with noncanonical amino acids (ncAAs) in response to the UAG nonsense codon …

Enhanced directed evolution in mammalian cells yields a hyperefficient pyrrolysyl tRNA for noncanonical amino acid mutagenesis

D Jewel, RE Kelemen, RL Huang, Z Zhu… - Angewandte …, 2024 - Wiley Online Library
Heterologous tRNAs used for noncanonical amino acid (ncAA) mutagenesis in mammalian
cells typically show poor activity. We recently introduced a virus‐assisted directed evolution …

Uncovering translation roadblocks during the development of a synthetic tRNA

A Prabhakar, N Krahn, J Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Ribosomes are remarkable in their malleability to accept diverse aminoacyl-tRNA substrates
from both the same organism and other organisms or domains of life. This is a critical feature …

Insights into genome recoding from the mechanism of a classic+ 1-frameshifting tRNA

H Gamper, H Li, I Masuda, D Miklos Robkis… - Nature …, 2021 - nature.com
While genome recoding using quadruplet codons to incorporate non-proteinogenic amino
acids is attractive for biotechnology and bioengineering purposes, the mechanism through …

Tuning tRNAs for improved translation

JL Weiss, JC Decker, A Bolano, N Krahn - Frontiers in Genetics, 2024 - frontiersin.org
Transfer RNAs have been extensively explored as the molecules that translate the genetic
code into proteins. At this interface of genetics and biochemistry, tRNAs direct the efficiency …