Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

J Čuklina, CH Lee, EG Williams, T Sajic… - Molecular systems …, 2021 - embopress.org
Advancements in mass spectrometry‐based proteomics have enabled experiments
encompassing hundreds of samples. While these large sample sets deliver much‐needed …

An overview of murine high fat diet as a model for type 2 diabetes mellitus

A Heydemann - Journal of diabetes research, 2016 - Wiley Online Library
Type 2 diabetes mellitus (T2DM) is a worldwide epidemic, which by all predictions will only
increase. To help in combating the devastating array of phenotypes associated with T2DM a …

Mitonuclear protein imbalance as a conserved longevity mechanism

RH Houtkooper, L Mouchiroud, D Ryu, N Moullan… - Nature, 2013 - nature.com
Longevity is regulated by a network of closely linked metabolic systems. We used a
combination of mouse population genetics and RNA interference in Caenorhabditis elegans …

A platform for experimental precision medicine: The extended BXD mouse family

DG Ashbrook, D Arends, P Prins, MK Mulligan, S Roy… - Cell systems, 2021 - cell.com
The challenge of precision medicine is to model complex interactions among DNA variants,
phenotypes, development, environments, and treatments. We address this challenge by …

[HTML][HTML] Harnessing genetic complexity to enhance translatability of Alzheimer's disease mouse models: a path toward precision medicine

SM Neuner, SE Heuer, MJ Huentelman… - Neuron, 2019 - cell.com
An individual's genetic makeup plays a large role in determining susceptibility to Alzheimer's
disease (AD) but has largely been ignored in preclinical studies. To test the hypothesis that …

The mitochondrial unfolded protein response, a conserved stress response pathway with implications in health and disease

V Jovaisaite, L Mouchiroud… - Journal of Experimental …, 2014 - journals.biologists.com
The ability to respond to various intracellular and/or extracellular stresses allows the
organism to adapt to changing environmental conditions and drives evolution. It is now well …

[HTML][HTML] PPARδ promotes running endurance by preserving glucose

W Fan, W Waizenegger, CS Lin, V Sorrentino, MX He… - Cell metabolism, 2017 - cell.com
Management of energy stores is critical during endurance exercise; a shift in substrate
utilization from glucose toward fat is a hallmark of trained muscle. Here we show that this key …

Pharmacological Inhibition of poly (ADP-ribose) polymerases improves fitness and mitochondrial function in skeletal muscle

E Pirinen, C Canto, YS Jo, L Morato, H Zhang… - Cell metabolism, 2014 - cell.com
We previously demonstrated that the deletion of the poly (ADP-ribose) polymerase (Parp)-1
gene in mice enhances oxidative metabolism, thereby protecting against diet-induced …

Systems proteomics of liver mitochondria function

EG Williams, Y Wu, P Jha, S Dubuis, P Blattmann… - Science, 2016 - science.org
INTRODUCTION Over the past two decades, continuous improvements in “omics”
technologies have driven an ever-greater capacity to define the relationships between …

Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function

EJ Chesler, L Lu, S Shou, Y Qu, J Gu, J Wang… - Nature …, 2005 - nature.com
Patterns of gene expression in the central nervous system are highly variable and heritable.
This genetic variation among normal individuals leads to considerable structural, functional …