CHARMM: the biomolecular simulation program
BR Brooks, CL Brooks III… - Journal of …, 2009 - Wiley Online Library
Abstract CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and
widely used molecular simulation program. It has been developed over the last three …
widely used molecular simulation program. It has been developed over the last three …
Advances in methods and algorithms in a modern quantum chemistry program package
Advances in theory and algorithms for electronic structure calculations must be incorporated
into program packages to enable them to become routinely used by the broader chemical …
into program packages to enable them to become routinely used by the broader chemical …
OpenMolcas: From source code to insight
In this Article we describe the OpenMolcas environment and invite the computational
chemistry community to collaborate. The open-source project already includes a large …
chemistry community to collaborate. The open-source project already includes a large …
Advances in molecular quantum chemistry contained in the Q-Chem 4 program package
Y Shao, Z Gan, E Epifanovsky, ATB Gilbert… - Molecular …, 2015 - Taylor & Francis
A summary of the technical advances that are incorporated in the fourth major release of the
q-Chem quantum chemistry program is provided, covering approximately the last seven …
q-Chem quantum chemistry program is provided, covering approximately the last seven …
Multiwfn: A multifunctional wavefunction analyzer
T Lu, F Chen - Journal of computational chemistry, 2012 - Wiley Online Library
Multiwfn is a multifunctional program for wavefunction analysis. Its main functions are:(1)
Calculating and visualizing real space function, such as electrostatic potential and electron …
Calculating and visualizing real space function, such as electrostatic potential and electron …
Gabedit—A graphical user interface for computational chemistry softwares
AR Allouche - Journal of computational chemistry, 2011 - Wiley Online Library
Gabedit is a freeware graphical user interface, offering preprocessing and postprocessing
adapted (to date) to nine computational chemistry software packages. It includes tools for …
adapted (to date) to nine computational chemistry software packages. It includes tools for …
Cclib: a library for package‐independent computational chemistry algorithms
NM O'boyle, AL Tenderholt… - Journal of computational …, 2008 - Wiley Online Library
There are now a wide variety of packages for electronic structure calculations, each of which
differs in the algorithms implemented and the output format. Many computational chemistry …
differs in the algorithms implemented and the output format. Many computational chemistry …
Spinach–a software library for simulation of spin dynamics in large spin systems
HJ Hogben, M Krzystyniak, GTP Charnock… - Journal of Magnetic …, 2011 - Elsevier
We introduce a software library incorporating our recent research into efficient simulation
algorithms for large spin systems. Liouville space simulations (including symmetry …
algorithms for large spin systems. Liouville space simulations (including symmetry …
DL-FIND: an open-source geometry optimizer for atomistic simulations
J Kästner, JM Carr, TW Keal, W Thiel… - The journal of …, 2009 - ACS Publications
Geometry optimization, including searching for transition states, accounts for most of the
CPU time spent in quantum chemistry, computational surface science, and solid-state …
CPU time spent in quantum chemistry, computational surface science, and solid-state …
Three-dimensional protein structure prediction: Methods and computational strategies
A long standing problem in structural bioinformatics is to determine the three-dimensional (3-
D) structure of a protein when only a sequence of amino acid residues is given. Many …
D) structure of a protein when only a sequence of amino acid residues is given. Many …