[HTML][HTML] How genomics can help biodiversity conservation

K Theissinger, C Fernandes, G Formenti, I Bista… - Trends in Genetics, 2023 - cell.com
The availability of public genomic resources can greatly assist biodiversity assessment,
conservation, and restoration efforts by providing evidence for scientifically informed …

[HTML][HTML] The era of reference genomes in conservation genomics

G Formenti, K Theissinger, C Fernandes, I Bista… - Trends in ecology & …, 2022 - cell.com
Progress in genome sequencing now enables the large-scale generation of reference
genomes. Various international initiatives aim to generate reference genomes representing …

Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyond

LM Carroll, RA Cheng, M Wiedmann… - Critical reviews in food …, 2022 - Taylor & Francis
The Bacillus cereus group, also known as B. cereus sensu lato (sl), is a species complex
that contains numerous closely related lineages, which vary in their ability to cause illness in …

Origin matters: Using a local reference genome improves measures in population genomics

DMJ Thorburn, K Sagonas… - Molecular ecology …, 2023 - Wiley Online Library
Genome sequencing enables answering fundamental questions about the genetic basis of
adaptation, population structure and epigenetic mechanisms. Yet, we usually need a …

Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent, Treponema pallidum

M Pla-Diaz, L Sánchez-Busó, L Giacani… - Molecular biology …, 2022 - academic.oup.com
The incidence of syphilis has risen worldwide in the last decade in spite of being an easily
treated infection. The causative agent of this sexually transmitted disease is the bacterium …

Rapid evolution of multidrug resistance in a Candida lusitaniae infection during micafungin monotherapy

NE Scott, S Edwin Erayil, SE Kline… - Antimicrobial agents …, 2023 - Am Soc Microbiol
Candida (Clavispora) lusitaniae is a rare, emerging non-albicans Candida species that can
cause life-threatening invasive infections, spread within hospital settings, and rapidly …

Maternal colonization versus nosocomial transmission as the source of drug-resistant bloodstream infection in an Indian neonatal intensive care unit: a prospective …

ML Robinson, J Johnson, S Naik, S Patil… - Clinical Infectious …, 2023 - academic.oup.com
Background Drug-resistant gram-negative (GN) pathogens are a common cause of neonatal
sepsis in low-and middle-income countries. Identifying GN transmission patterns is vital to …

Techniques in bacterial strain typing: past, present, and future

SR Simar, BM Hanson, CA Arias - Current opinion in infectious …, 2021 - journals.lww.com
Genomic bacterial strain typing has facilitated a paradigm shift in clinical and molecular
epidemiology. The increased resolution that these new techniques provide, along with …

The Microbiome of Peri-Implantitis: A Systematic Review of Next-Generation Sequencing Studies

K Chun Giok, RK Menon - Antibiotics, 2023 - mdpi.com
(1) Introduction: Current evidence shows that mechanical debridement augmented with
systemic and topical antibiotics may be beneficial for the treatment of peri-implantitis. The …

Genome-wide association mapping in a sweet cherry germplasm collection (Prunus avium L.) reveals candidate genes for fruit quality traits

ASL Donkpegan, A Bernard, T Barreneche… - Horticulture …, 2023 - academic.oup.com
In sweet cherry (Prunus avium L.), large variability exists for various traits related to fruit
quality. There is a need to discover the genetic architecture of these traits in order to …