Forest soil bacteria: diversity, involvement in ecosystem processes, and response to global change

S Lladó, R López-Mondéjar… - … and Molecular Biology …, 2017 - Am Soc Microbiol
The ecology of forest soils is an important field of research due to the role of forests as
carbon sinks. Consequently, a significant amount of information has been accumulated …

Next‐generation sequencing technologies for environmental DNA research

S Shokralla, JL Spall, JF Gibson… - Molecular …, 2012 - Wiley Online Library
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …

Diversity and composition of soil Acidobacteria and Proteobacteria communities as a bacterial indicator of past land-use change from forest to farmland

HS Kim, SH Lee, HY Jo, KT Finneran… - Science of the Total …, 2021 - Elsevier
The land-use change from natural to managed farmland ecosystems can undergo
perturbations and significantly impact soil environment and communities. To understand …

[HTML][HTML] Molecular ecological network analyses

Y Deng, YH Jiang, Y Yang, Z He, F Luo, J Zhou - BMC bioinformatics, 2012 - Springer
Background Understanding the interaction among different species within a community and
their responses to environmental changes is a central goal in ecology. However, defining …

Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization

N Udikovic-Kolic, F Wichmann… - Proceedings of the …, 2014 - National Acad Sciences
The increasing prevalence of antibiotic-resistant bacteria is a global threat to public health.
Agricultural use of antibiotics is believed to contribute to the spread of antibiotic resistance …

[HTML][HTML] Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

K Kaiser, B Wemheuer, V Korolkow, F Wemheuer… - Scientific Reports, 2016 - nature.com
Soil bacteria provide a large range of ecosystem services such as nutrient cycling. Despite
their important role in soil systems, compositional and functional responses of bacterial …

Expansion of urease-and uricase-containing, indole-and p-cresol-forming and contraction of short-chain fatty acid-producing intestinal microbiota in ESRD

J Wong, YM Piceno, TZ DeSantis, M Pahl… - American journal of …, 2014 - karger.com
Background: Intestinal microbiome constitutes a symbiotic ecosystem that is essential for
health, and changes in its composition/function cause various illnesses. Biochemical milieu …

Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples

AJ Marsh, O O'Sullivan, C Hill, RP Ross, PD Cotter - Food microbiology, 2014 - Elsevier
Kombucha is a sweetened tea beverage that, as a consequence of fermentation, contains
ethanol, carbon dioxide, a high concentration of acid (gluconic, acetic and lactic) as well as …

Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields

K Fan, C Cardona, Y Li, YU Shi, X Xiang… - Soil Biology and …, 2017 - Elsevier
The spatial distribution of bacteria in bulk soil has been well studied, but little is known about
the bacterial biogeography in the rhizosphere of crops. Here, we investigated bacterial …

Biogeography of soil bacteria and archaea across France

B Karimi, S Terrat, S Dequiedt, NPA Saby… - Science …, 2018 - science.org
Over the last two decades, a considerable effort has been made to decipher the
biogeography of soil microbial communities as a whole, from small to broad scales. In …