Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

L López-Maury, S Marguerat, J Bähler - Nature Reviews Genetics, 2008 - nature.com
Organisms are constantly exposed to a wide range of environmental changes, including
both short-term changes during their lifetime and longer-term changes across generations …

Yeast osmoregulation

S Hohmann, M Krantz, B Nordlander - Methods in enzymology, 2007 - Elsevier
Osmoregulation is the active control of the cellular water balance and encompasses
homeostatic mechanisms crucial for life. The osmoregulatory system in the yeast …

Synonymous mutations in representative yeast genes are mostly strongly non-neutral

X Shen, S Song, C Li, J Zhang - Nature, 2022 - nature.com
Synonymous mutations in protein-coding genes do not alter protein sequences and are thus
generally presumed to be neutral or nearly neutral,,,–. Here, to experimentally verify this …

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution

DA Drummond, CO Wilke - Cell, 2008 - cell.com
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …

The automation of science

RD King, J Rowland, SG Oliver, M Young, W Aubrey… - Science, 2009 - science.org
The basis of science is the hypothetico-deductive method and the recording of experiments
in sufficient detail to enable reproducibility. We report the development of Robot Scientist …

Evolutionary rescue: an emerging focus at the intersection between ecology and evolution

A Gonzalez, O Ronce, R Ferriere… - … Transactions of the …, 2013 - royalsocietypublishing.org
There is concern that the rate of environmental change is now exceeding the capacity of
many populations to adapt. Mitigation of biodiversity loss requires science that integrates …

Systematic exploration of essential yeast gene function with temperature-sensitive mutants

Z Li, FJ Vizeacoumar, S Bahr, J Li, J Warringer… - Nature …, 2011 - nature.com
Conditional temperature-sensitive (ts) mutations are valuable reagents for studying essential
genes in the yeast Saccharomyces cerevisiae. We constructed 787 ts strains, covering 497 …

Adaptation and evolutionary rescue in metapopulations experiencing environmental deterioration

G Bell, A Gonzalez - Science, 2011 - science.org
It is not known whether evolution will usually be rapid enough to allow a species to adapt
and persist in a deteriorating environment. We tracked the eco-evolutionary dynamics of …

A comprehensive strategy enabling high-resolution functional analysis of the yeast genome

DK Breslow, DM Cameron, SR Collins, M Schuldiner… - Nature …, 2008 - nature.com
Functional genomic studies in Saccharomyces cerevisiae have contributed enormously to
our understanding of cellular processes. Their full potential, however, has been hampered …

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

A Baryshnikova, M Costanzo, Y Kim, H Ding, J Koh… - Nature …, 2010 - nature.com
Global quantitative analysis of genetic interactions is a powerful approach for deciphering
the roles of genes and mapping functional relationships among pathways. Using colony size …