[HTML][HTML] Investigating mitochondrial redox state using NADH and NADPH autofluorescence

TS Blacker, MR Duchen - Free Radical Biology and Medicine, 2016 - Elsevier
The redox states of the NAD and NADP pyridine nucleotide pools play critical roles in
defining the activity of energy producing pathways, in driving oxidative stress and in …

Advanced applications of RNA sequencing and challenges

Y Han, S Gao, K Muegge, W Zhang… - … and biology insights, 2015 - journals.sagepub.com
Next-generation sequencing technologies have revolutionarily advanced sequence-based
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …

Integrating knowledge and omics to decipher mechanisms via large‐scale models of signaling networks

M Garrido‐Rodriguez, K Zirngibl, O Ivanova… - Molecular systems …, 2022 - embopress.org
Signal transduction governs cellular behavior, and its dysregulation often leads to human
disease. To understand this process, we can use network models based on prior …

Brain neurotrauma: molecular, neuropsychological, and rehabilitation aspects

FH Kobeissy - 2015 - books.google.com
With the contribution from more than one hundred CNS neurotrauma experts, this book
provides a comprehensive and up-to-date account on the latest developments in the area of …

[HTML][HTML] High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

MR Hidalgo, C Cubuk, A Amadoz, F Salavert… - Oncotarget, 2017 - ncbi.nlm.nih.gov
Understanding the aspects of the cell functionality that account for disease or drug action
mechanisms is a main challenge for precision medicine. Here we propose a new method …

The promise of multi-omics and clinical data integration to identify and target personalized healthcare approaches in autism spectrum disorders

R Higdon, RK Earl, L Stanberry, CM Hudac… - Omics: a journal of …, 2015 - liebertpub.com
Complex diseases are caused by a combination of genetic and environmental factors,
creating a difficult challenge for diagnosis and defining subtypes. This review article …

Transcriptome and cell physiological analyses in different rice cultivars provide new insights into adaptive and salinity stress responses

E Formentin, C Sudiro, G Perin, S Riccadonna… - Frontiers in plant …, 2018 - frontiersin.org
Salinity tolerance has been extensively investigated in recent years due to its agricultural
importance. Several features, such as the regulation of ionic transporters and metabolic …

A comparison of mechanistic signaling pathway activity analysis methods

A Amadoz, MR Hidalgo, C Cubuk… - Briefings in …, 2019 - academic.oup.com
Understanding the aspects of cell functionality that account for disease mechanisms or drug
modes of action is a main challenge for precision medicine. Classical gene-based …

[HTML][HTML] A gene pathway enrichment method based on improved TF-IDF algorithm

S Xu, Y Leng, G Feng, C Zhang, M Chen - Biochemistry and Biophysics …, 2023 - Elsevier
Gene pathway enrichment analysis is a widely used method to analyze whether a gene set
is statistically enriched on certain biological pathway network. Current gene pathway …

Understanding disease mechanisms with models of signaling pathway activities

P Sebastian-Leon, E Vidal, P Minguez, A Conesa… - BMC systems …, 2014 - Springer
Background Understanding the aspects of the cell functionality that account for disease or
drug action mechanisms is one of the main challenges in the analysis of genomic data and …