Advances in RNA structure analysis by chemical probing
KM Weeks - Current opinion in structural biology, 2010 - Elsevier
RNA is arguably the most versatile biological macromolecule because of its ability both to
encode and to manipulate genetic information. The diverse roles of RNA depend on its …
encode and to manipulate genetic information. The diverse roles of RNA depend on its …
Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments
Multivalent polyions can undergo complex coacervation, producing membraneless
compartments that accumulate ribozymes and enhance catalysis, and offering a mechanism …
compartments that accumulate ribozymes and enhance catalysis, and offering a mechanism …
5′-UTR G-quadruplex structures acting as translational repressors
JD Beaudoin, JP Perreault - Nucleic acids research, 2010 - academic.oup.com
Given that greater than 90% of the human genome is expressed, it is logical to assume that
post-transcriptional regulatory mechanisms must be the primary means of controlling the …
post-transcriptional regulatory mechanisms must be the primary means of controlling the …
Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation
M Duval, A Korepanov, O Fuchsbauer, P Fechter… - PLoS …, 2013 - journals.plos.org
Regulation of translation initiation is well appropriate to adapt cell growth in response to
stress and environmental changes. Many bacterial mRNAs adopt structures in their 5 …
stress and environmental changes. Many bacterial mRNAs adopt structures in their 5 …
Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening
JD Beaudoin, JP Perreault - Nucleic acids research, 2013 - academic.oup.com
Guanine-rich RNA sequences can fold into non-canonical, four stranded helical structures
called G-quadruplexes that have been shown to be widely distributed within the mammalian …
called G-quadruplexes that have been shown to be widely distributed within the mammalian …
Telomere DNA G-quadruplex folding within actively extending human telomerase
LI Jansson, J Hentschel, JW Parks… - Proceedings of the …, 2019 - National Acad Sciences
Telomerase reverse transcribes short guanine (G)-rich DNA repeat sequences from its
internal RNA template to maintain telomere length. G-rich telomere DNA repeats readily fold …
internal RNA template to maintain telomere length. G-rich telomere DNA repeats readily fold …
kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry
D Burnouf, E Ennifar, S Guedich, B Puffer… - Journal of the …, 2012 - ACS Publications
Isothermal titration calorimetry (ITC) is the method of choice for obtaining thermodynamic
data on a great variety of systems. Here we show that modern ITC apparatus and new …
data on a great variety of systems. Here we show that modern ITC apparatus and new …
Determination of in vivo RNA structure in low-abundance transcripts
RNA structure plays important roles in diverse biological processes. However, the structures
of all but the few most abundant RNAs are presently unknown in vivo. Here we introduce …
of all but the few most abundant RNAs are presently unknown in vivo. Here we introduce …
Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis
R Yamagami, JL Bingaman, EA Frankel… - Nature …, 2018 - nature.com
Most RNA folding studies have been performed under non-physiological conditions of high
concentrations (≥ 10 mM) of Mg2+ free, while actual cellular concentrations of Mg2+ free …
concentrations (≥ 10 mM) of Mg2+ free, while actual cellular concentrations of Mg2+ free …
miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5′ terminus
Hepatitis C virus (HCV) is a positive-sense RNA virus that interacts with the liver-specific
microRNA, miR-122. miR-122 binds to two sites in the 5′ untranslated region (UTR) and …
microRNA, miR-122. miR-122 binds to two sites in the 5′ untranslated region (UTR) and …