Advances in RNA structure analysis by chemical probing

KM Weeks - Current opinion in structural biology, 2010 - Elsevier
RNA is arguably the most versatile biological macromolecule because of its ability both to
encode and to manipulate genetic information. The diverse roles of RNA depend on its …

Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments

FP Cakmak, S Choi, MCO Meyer… - Nature …, 2020 - nature.com
Multivalent polyions can undergo complex coacervation, producing membraneless
compartments that accumulate ribozymes and enhance catalysis, and offering a mechanism …

5′-UTR G-quadruplex structures acting as translational repressors

JD Beaudoin, JP Perreault - Nucleic acids research, 2010 - academic.oup.com
Given that greater than 90% of the human genome is expressed, it is logical to assume that
post-transcriptional regulatory mechanisms must be the primary means of controlling the …

Escherichia coli Ribosomal Protein S1 Unfolds Structured mRNAs Onto the Ribosome for Active Translation Initiation

M Duval, A Korepanov, O Fuchsbauer, P Fechter… - PLoS …, 2013 - journals.plos.org
Regulation of translation initiation is well appropriate to adapt cell growth in response to
stress and environmental changes. Many bacterial mRNAs adopt structures in their 5 …

Exploring mRNA 3′-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening

JD Beaudoin, JP Perreault - Nucleic acids research, 2013 - academic.oup.com
Guanine-rich RNA sequences can fold into non-canonical, four stranded helical structures
called G-quadruplexes that have been shown to be widely distributed within the mammalian …

Telomere DNA G-quadruplex folding within actively extending human telomerase

LI Jansson, J Hentschel, JW Parks… - Proceedings of the …, 2019 - National Acad Sciences
Telomerase reverse transcribes short guanine (G)-rich DNA repeat sequences from its
internal RNA template to maintain telomere length. G-rich telomere DNA repeats readily fold …

kinITC: a new method for obtaining joint thermodynamic and kinetic data by isothermal titration calorimetry

D Burnouf, E Ennifar, S Guedich, B Puffer… - Journal of the …, 2012 - ACS Publications
Isothermal titration calorimetry (ITC) is the method of choice for obtaining thermodynamic
data on a great variety of systems. Here we show that modern ITC apparatus and new …

Determination of in vivo RNA structure in low-abundance transcripts

CK Kwok, Y Ding, Y Tang, SM Assmann… - Nature …, 2013 - nature.com
RNA structure plays important roles in diverse biological processes. However, the structures
of all but the few most abundant RNAs are presently unknown in vivo. Here we introduce …

Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis

R Yamagami, JL Bingaman, EA Frankel… - Nature …, 2018 - nature.com
Most RNA folding studies have been performed under non-physiological conditions of high
concentrations (≥ 10 mM) of Mg2+ free, while actual cellular concentrations of Mg2+ free …

miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5′ terminus

J Chahal, LFR Gebert, HH Gan, E Camacho… - Nucleic acids …, 2019 - academic.oup.com
Hepatitis C virus (HCV) is a positive-sense RNA virus that interacts with the liver-specific
microRNA, miR-122. miR-122 binds to two sites in the 5′ untranslated region (UTR) and …