A high-resolution protein architecture of the budding yeast genome
The genome-wide architecture of chromatin-associated proteins that maintains chromosome
integrity and gene regulation is not well defined. Here we use chromatin …
integrity and gene regulation is not well defined. Here we use chromatin …
[HTML][HTML] Quantitative ChIP-Seq normalization reveals global modulation of the epigenome
DA Orlando, MW Chen, VE Brown, S Solanki, YJ Choi… - Cell reports, 2014 - cell.com
Epigenomic profiling by chromatin immunoprecipitation coupled with massively parallel
DNA sequencing (ChIP-seq) is a prevailing methodology used to investigate chromatin …
DNA sequencing (ChIP-seq) is a prevailing methodology used to investigate chromatin …
An interactive environment for agile analysis and visualization of ChIP-sequencing data
To empower experimentalists with a means for fast and comprehensive chromatin
immunoprecipitation sequencing (ChIP-seq) data analyses, we introduce an integrated …
immunoprecipitation sequencing (ChIP-seq) data analyses, we introduce an integrated …
[HTML][HTML] Practical guidelines for the comprehensive analysis of ChIP-seq data
Mapping the chromosomal locations of transcription factors, nucleosomes, histone
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …
Recombination initiation maps of individual human genomes
Introduction The dramatic events of meiotic recombination culminate in the exchange of
genetic information between parental chromosomes and ensure the production of …
genetic information between parental chromosomes and ensure the production of …
[HTML][HTML] Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding
FNR is a well-studied global regulator of anaerobiosis, which is widely conserved across
bacteria. Despite the importance of FNR and anaerobiosis in microbial lifestyles, the factors …
bacteria. Despite the importance of FNR and anaerobiosis in microbial lifestyles, the factors …
Reprogramming of the histone H3. 3 landscape in the early mouse embryo
T Ishiuchi, S Abe, K Inoue, WKA Yeung, Y Miki… - Nature structural & …, 2021 - nature.com
Epigenetic reprogramming of the zygote involves dynamic incorporation of histone variant
H3. 3. However, the genome-wide distribution and dynamics of H3. 3 during early …
H3. 3. However, the genome-wide distribution and dynamics of H3. 3 during early …
Defining bacterial regulons using ChIP-seq
Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) is a
powerful method that identifies protein–DNA binding sites in vivo. Recent studies have …
powerful method that identifies protein–DNA binding sites in vivo. Recent studies have …
A comprehensive comparison of tools for differential ChIP-seq analysis
ChIP-seq has become a widely adopted genomic assay in recent years to determine binding
sites for transcription factors or enrichments for specific histone modifications. Beside …
sites for transcription factors or enrichments for specific histone modifications. Beside …
The PfAP2‐G2 transcription factor is a critical regulator of gametocyte maturation
S Singh, JM Santos, LM Orchard… - Molecular …, 2021 - Wiley Online Library
Differentiation from asexual blood stages to mature sexual gametocytes is required for the
transmission of malaria parasites. Here, we report that the ApiAP2 transcription factor, PfAP2 …
transmission of malaria parasites. Here, we report that the ApiAP2 transcription factor, PfAP2 …