Hydroxyl radical protein footprinting: a mass spectrometry-based structural method for studying the higher order structure of proteins

A McKenzie-Coe, NS Montes, LM Jones - Chemical reviews, 2021 - ACS Publications
Hydroxyl radical protein footprinting (HRPF) coupled to mass spectrometry has been
successfully used to investigate a plethora of protein-related questions. The method, which …

Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises

A Bachi, I Dalle-Donne, A Scaloni - Chemical reviews, 2013 - ACS Publications
Inevitable byproducts of aerobic metabolism are free radicals and other highly reactive
oxidants and nitrosants that are continuously formed within cells. Most cells generally …

Identification of novel fluorinated surfactants in aqueous film forming foams and commercial surfactant concentrates

LA D'Agostino, SA Mabury - Environmental science & technology, 2014 - ACS Publications
Recent studies comparing the results of total organofluorine-combustion ion
chromatography (TOF-CIC) to targeted analysis of perfluoroalkyl and polyfluoroalkyl …

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes

A Kao, C Chiu, D Vellucci, Y Yang, VR Patel… - Molecular & Cellular …, 2011 - ASBMB
Knowledge of elaborate structures of protein complexes is fundamental for understanding
their functions and regulations. Although cross-linking coupled with mass spectrometry (MS) …

A sulfilimine bond identified in collagen IV

R Vanacore, AJL Ham, M Voehler, CR Sanders… - Science, 2009 - science.org
Collagen IV networks are ancient proteins of basement membranes that underlie epithelia in
metazoa from sponge to human. The networks provide structural integrity to tissues and …

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

EA Kapp, F Schütz, LM Connolly, JA Chakel… - …, 2005 - Wiley Online Library
MS/MS and associated database search algorithms are essential proteomic tools for
identifying peptides. Due to their widespread use, it is now time to perform a systematic …

MALDI versus ESI: the impact of the ion source on peptide identification

WM Nadler, D Waidelich, A Kerner… - Journal of proteome …, 2017 - ACS Publications
For mass spectrometry-based proteomic analyses, electrospray ionization (ESI) and matrix-
assisted laser desorption/ionization (MALDI) are the commonly used ionization techniques …

[HTML][HTML] Chlorination and oxidation of the extracellular matrix protein laminin and basement membrane extracts by hypochlorous acid and myeloperoxidase

T Nybo, S Dieterich, LF Gamon, CY Chuang… - Redox Biology, 2019 - Elsevier
Basement membranes are specialized extracellular matrices that underlie arterial wall
endothelial cells, with laminin being a key structural and biologically-active component …

A systematic investigation into the nature of tryptic HCD spectra

A Michalski, N Neuhauser, J Cox… - Journal of proteome …, 2012 - ACS Publications
Modern mass spectrometry-based proteomics can produce millions of peptide fragmentation
spectra, which are automatically identified in databases using sequence-specific b-or y-ions …

Radiolytic modification of sulfur-containing amino acid residues in model peptides: fundamental studies for protein footprinting

G Xu, MR Chance - Analytical chemistry, 2005 - ACS Publications
Protein footprinting based on hydroxyl radical-mediated modification and quantitative mass
spectroscopic analysis is a proven technique for examining protein structure, protein− ligand …