[HTML][HTML] Mouse models of colorectal cancer: Past, present and future perspectives

F Bürtin, CS Mullins, M Linnebacher - World journal of …, 2020 - ncbi.nlm.nih.gov
Colorectal cancer (CRC) is the third most common diagnosed malignancy among both
sexes in the United States as well as in the European Union. While the incidence and …

[HTML][HTML] Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health

HC Jubb, AP Pandurangan, MA Turner… - Progress in biophysics …, 2017 - Elsevier
Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

Towards a structurally resolved human protein interaction network

DF Burke, P Bryant, I Barrio-Hernandez… - Nature Structural & …, 2023 - nature.com
Cellular functions are governed by molecular machines that assemble through protein-
protein interactions. Their atomic details are critical to studying their molecular mechanisms …

[HTML][HTML] Pan-cancer proteogenomics connects oncogenic drivers to functional states

Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron… - Cell, 2023 - cell.com
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …

[HTML][HTML] Comprehensive characterization of cancer driver genes and mutations

MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta… - Cell, 2018 - cell.com
Identifying molecular cancer drivers is critical for precision oncology. Multiple advanced
algorithms to identify drivers now exist, but systematic attempts to combine and optimize …

[HTML][HTML] The structural coverage of the human proteome before and after AlphaFold

E Porta-Pardo, V Ruiz-Serra, S Valentini… - PLoS computational …, 2022 - journals.plos.org
The protein structure field is experiencing a revolution. From the increased throughput of
techniques to determine experimental structures, to developments such as cryo-EM that …

Comprehensive characterization of protein–protein interactions perturbed by disease mutations

F Cheng, J Zhao, Y Wang, W Lu, Z Liu, Y Zhou… - Nature …, 2021 - nature.com
Technological and computational advances in genomics and interactomics have made it
possible to identify how disease mutations perturb protein–protein interaction (PPI) networks …

3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets

J Gao, MT Chang, HC Johnsen, SP Gao, BE Sylvester… - Genome medicine, 2017 - Springer
Many mutations in cancer are of unknown functional significance. Standard methods use
statistically significant recurrence of mutations in tumor samples as an indicator of functional …

Comprehensive profiling of 1015 patients' exomes reveals genomic-clinical associations in colorectal cancer

Q Zhao, F Wang, YX Chen, S Chen, YC Yao… - Nature …, 2022 - nature.com
The genetic basis of colorectal cancer (CRC) and its clinical associations remain poorly
understood due to limited samples or targeted genes in current studies. Here, we perform …

Transcription factor activities enhance markers of drug sensitivity in cancer

L Garcia-Alonso, F Iorio, A Matchan, N Fonseca… - Cancer research, 2018 - AACR
Transcriptional dysregulation induced by aberrant transcription factors (TF) is a key feature
of cancer, but its global influence on drug sensitivity has not been examined. Here, we infer …