Computational approaches for the design of modulators targeting protein-protein interactions
ABSTRACT Background Protein-protein interactions (PPIs) are intriguing targets for
designing novel small-molecule inhibitors. The role of PPIs in various infectious and …
designing novel small-molecule inhibitors. The role of PPIs in various infectious and …
[HTML][HTML] Following the design path of isoform-selective Hsp90 inhibitors: small differences, great opportunities
J Dernovšek, T Tomašič - Pharmacology & therapeutics, 2023 - Elsevier
The heat shock protein 90 (Hsp90) family consists of four highly conserved isoforms: the
mitochondrial TRAP-1, the endoplasmic reticulum-localised Grp94, and the cytoplasmic …
mitochondrial TRAP-1, the endoplasmic reticulum-localised Grp94, and the cytoplasmic …
Decrypting Allostery in Membrane-Bound K-Ras4B Using Complementary In Silico Approaches Based on Unbiased Molecular Dynamics Simulations
M Castelli, F Marchetti, S Osuna… - Journal of the …, 2023 - ACS Publications
Protein functions are dynamically regulated by allostery, which enables conformational
communication even between faraway residues, and expresses itself in many forms, akin to …
communication even between faraway residues, and expresses itself in many forms, akin to …
[PDF][PDF] Multiscale allostery: basic mechanisms and versatility in diagnostics and drug design
IN Berezovsky, R Nussinov - Journal of Molecular Biology, 2022 - Elsevier
There were several significant milestones in the last century, from the discovery of the Bohr
effect [1] to understanding that every dynamic protein can be inherently allosteric [2, 3]. It …
effect [1] to understanding that every dynamic protein can be inherently allosteric [2, 3]. It …
On the allosteric puzzle and pocket crosstalk through computational means
Allostery is a constitutive, albeit often elusive, feature of biomolecular systems, which heavily
determines their functioning. Its mechanical, entropic, long-range, ligand, and environment …
determines their functioning. Its mechanical, entropic, long-range, ligand, and environment …
No dance, no partner! A tale of receptor flexibility in docking and virtual screening
Modern drug design relies on a detailed understanding of the molecular recognition process
by which biological partners such as a protein and a drug interact and bind to each other …
by which biological partners such as a protein and a drug interact and bind to each other …
Allosteric drugs: New principles and design approaches
WV Tee, IN Berezovsky - Current Opinion in Structural Biology, 2024 - Elsevier
Focusing on an important biomedical implication of allostery–design of allosteric drugs, we
describe characteristics of allosteric sites, effectors, and their modes of actions …
describe characteristics of allosteric sites, effectors, and their modes of actions …
Conformational behavior of SARS-Cov-2 spike protein variants: Evolutionary jumps in sequence reverberate in structural dynamic differences
SARS-CoV-2 has evolved rapidly in the first 3 years of pandemic diffusion. The initial
evolution of the virus appeared to proceed through big jumps in sequence changes rather …
evolution of the virus appeared to proceed through big jumps in sequence changes rather …
Recent developments of HSP90 inhibitors: an updated patent review (2020-present)
J Liu, H Shu, Q Xia, Q You, L Wang - Expert Opinion on …, 2024 - Taylor & Francis
Introduction The 90-kDa heat shock protein (HSP90) functions as a molecular chaperone, it
assumes a significant role in diseases such as cancer, inflammation, neurodegeneration …
assumes a significant role in diseases such as cancer, inflammation, neurodegeneration …
Sequence-dependent model of allosteric communication
E Guarnera, IN Berezovsky - The Journal of Chemical Physics, 2023 - pubs.aip.org
The omnipresence and diversity of allosteric regulation in proteins and protein associations
complemented by the potential for the design of allosterically acting biologics and drugs call …
complemented by the potential for the design of allosterically acting biologics and drugs call …