Recent advances and future perspectives in cotton research

G Huang, JQ Huang, XY Chen… - Annual review of plant …, 2021 - annualreviews.org
Cotton is not only the world's most important natural fiber crop, but it is also an ideal system
in which to study genome evolution, polyploidization, and cell elongation. With the assembly …

A comprehensive overview of cotton genomics, biotechnology and molecular biological studies

X Wen, Z Chen, Z Yang, M Wang, S Jin, G Wang… - Science China Life …, 2023 - Springer
Cotton is an irreplaceable economic crop currently domesticated in the human world for its
extremely elongated fiber cells specialized in seed epidermis, which makes it of high …

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its
impact on selection and domestication remains elusive. Here we analyze genome evolution …

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome …

G Huang, Z Wu, RG Percy, M Bai, Y Li… - Nature …, 2020 - nature.com
Upon assembling the first Gossypium herbaceum (A1) genome and substantially improving
the existing Gossypium arboreum (A2) and Gossypium hirsutum ((AD) 1) genomes, we …

Structural variation (SV)-based pan-genome and GWAS reveal the impacts of SVs on the speciation and diversification of allotetraploid cottons

S Jin, Z Han, Y Hu, Z Si, F Dai, L He, Y Cheng, Y Li… - Molecular Plant, 2023 - cell.com
Structural variations (SVs) have long been described as being involved in the origin,
adaption, and domestication of species. However, the underlying genetic and genomic …

Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

J Li, D Yuan, P Wang, Q Wang, M Sun, Z Liu, H Si, Z Xu… - Genome biology, 2021 - Springer
Background Millennia of directional human selection has reshaped the genomic architecture
of cultivated cotton relative to wild counterparts, but we have limited understanding of the …

Origin and adaptation to high altitude of Tibetan semi-wild wheat

W Guo, M Xin, Z Wang, Y Yao, Z Hu, W Song… - Nature …, 2020 - nature.com
Tibetan wheat is grown under environmental constraints at high-altitude conditions, but its
underlying adaptation mechanism remains unknown. Here, we present a draft genome …

NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes

W He, J Yang, Y Jing, L Xu, K Yu, X Fang - Bioinformatics, 2023 - academic.oup.com
Large-scale comparative genomic studies have provided important insights into species
evolution and diversity, but also lead to a great challenge to visualize. Quick catching or …

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

Z Yang, X Ge, Z Yang, W Qin, G Sun, Z Wang… - Nature …, 2019 - nature.com
Multiple cotton genomes (diploid and tetraploid) have been assembled. However, genomic
variations between cultivars of allotetraploid upland cotton (Gossypium hirsutum L.), the …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
Allotetraploid cotton (Gossypium) species represents a model system for the study of plant
polyploidy, molecular evolution, and domestication. Here, chromosome-scale genome …