Structural symmetry in membrane proteins

LR Forrest - Annual review of biophysics, 2015 - annualreviews.org
Symmetry is a common feature among natural systems, including protein structures. A strong
propensity toward symmetric architectures has long been recognized for water-soluble …

A vocabulary of ancient peptides at the origin of folded proteins

V Alva, J Söding, AN Lupas - elife, 2015 - elifesciences.org
The seemingly limitless diversity of proteins in nature arose from only a few thousand
domain prototypes, but the origin of these themselves has remained unclear. We are …

Internal symmetry in protein structures: prevalence, functional relevance and evolution

S Balaji - Current opinion in structural biology, 2015 - Elsevier
Highlights•About 20% of SCOP folds, superfamilies and families have internal symmetry.•All-
β and membrane folds and superfamilies are the most prominent in symmetry.•Connecting …

[HTML][HTML] Automated evaluation of quaternary structures from protein crystals

S Bliven, A Lafita, A Parker, G Capitani… - PLoS computational …, 2018 - journals.plos.org
A correct assessment of the quaternary structure of proteins is a fundamental prerequisite to
understanding their function, physico-chemical properties and mode of interaction with other …

Stonefish toxin defines an ancient branch of the perforin-like superfamily

AM Ellisdon, CF Reboul, S Panjikar… - Proceedings of the …, 2015 - National Acad Sciences
The lethal factor in stonefish venom is stonustoxin (SNTX), a heterodimeric cytolytic protein
that induces cardiovascular collapse in humans and native predators. Here, using X-ray …

[HTML][HTML] Repeat-swap homology modeling of secondary active transporters: updated protocol and prediction of elevator-type mechanisms

A Vergara-Jaque, C Fenollar-Ferrer… - Frontiers in …, 2015 - frontiersin.org
Secondary active transporters are critical for neurotransmitter clearance and recycling
during synaptic transmission and uptake of nutrients. These proteins mediate the movement …

[HTML][HTML] Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

SE Bliven, A Lafita, PW Rose, G Capitani… - PLoS computational …, 2019 - journals.plos.org
Many proteins fold into highly regular and repetitive three dimensional structures. The
analysis of structural patterns and repeated elements is fundamental to understand protein …

[HTML][HTML] H2A-H2B histone dimer plasticity and its functional implications

AS Kniazeva, GA Armeev, AK Shaytan - Cells, 2022 - mdpi.com
The protein core of the nucleosome is composed of an H3-H4 histone tetramer and two H2A-
H2B histone dimers. The tetramer organizes the central 60 DNA bp, while H2A-H2B dimers …

General principles of secondary active transporter function

O Beckstein, F Naughton - Biophysics Reviews, 2022 - pubs.aip.org
Transport of ions and small molecules across the cell membrane against electrochemical
gradients is catalyzed by integral membrane proteins that use a source of free energy to …

Analytical symmetry detection in protein assemblies. I. Cyclic symmetries

G Pagès, E Kinzina, S Grudinin - Journal of Structural Biology, 2018 - Elsevier
Symmetry in protein, and, more generally, in macromolecular assemblies is a key point to
understand their structure, stability and function. Many symmetrical assemblies are currently …