Large-Scale Mechanistic Models of Brain Circuits with Biophysically and Morphologically Detailed Neurons

S Dura-Bernal, B Herrera, C Lupascu… - Journal of …, 2024 - jneurosci.org
Understanding the brain requires studying its multiscale interactions from molecules to
networks. The increasing availability of large-scale datasets detailing brain circuit …

Modernizing the NEURON simulator for sustainability, portability, and performance

O Awile, P Kumbhar, N Cornu… - Frontiers in …, 2022 - frontiersin.org
The need for reproducible, credible, multiscale biological modeling has led to the
development of standardized simulation platforms, such as the widely-used NEURON …

Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics

S Dura-Bernal, EY Griffith, A Barczak, MN O'Connell… - Cell reports, 2023 - cell.com
We developed a detailed model of macaque auditory thalamocortical circuits, including
primary auditory cortex (A1), medial geniculate body (MGB), and thalamic reticular nucleus …

Multiscale computer model of the spinal dorsal horn reveals changes in network processing associated with chronic pain

L Medlock, K Sekiguchi, S Hong… - Journal of …, 2022 - Soc Neuroscience
Pain-related sensory input is processed in the spinal dorsal horn (SDH) before being
relayed to the brain. That processing profoundly influences whether stimuli are correctly or …

Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE

FS Borges, JVS Moreira, LM Takarabe… - Frontiers in …, 2022 - frontiersin.org
The primary somatosensory cortex (S1) of mammals is critically important in the perception
of touch and related sensorimotor behaviors. In 2015, the Blue Brain Project (BBP) …

Closha 2.0: a bio-workflow design system for massive genome data analysis on high performance cluster infrastructure

G Ko, PG Kim, BH Yoon, JH Kim, W Song, IS Byeon… - BMC …, 2024 - Springer
Background The explosive growth of next-generation sequencing data has resulted in ultra-
large-scale datasets and significant computational challenges. As the cost of next …