Nanopores in graphene and other 2D materials: a decade's journey toward sequencing

H Qiu, W Zhou, W Guo - ACS nano, 2021 - ACS Publications
Nanopore techniques offer a low-cost, label-free, and high-throughput platform that could be
used in single-molecule biosensing and in particular DNA sequencing. Since 2010 …

[HTML][HTML] Interfacing graphene-based materials with neural cells

M Bramini, G Alberini, E Colombo… - Frontiers in systems …, 2018 - frontiersin.org
The scientific community has witnessed an exponential increase in the applications of
graphene and graphene-based materials in a wide range of fields, from engineering to …

Nanocarbons for DNA sequencing: A review

N Yang, X Jiang - Carbon, 2017 - Elsevier
DNA sequencing using nanopores, so-named nanopore sequencing, is one of the most
promising and revolutionary DNA sequencing technologies to provide the order and the type …

[HTML][HTML] Detection and mapping of DNA methylation with 2D material nanopores

H Qiu, A Sarathy, K Schulten, JP Leburton - npj 2D Materials and …, 2017 - nature.com
DNA methylation is an epigenetic modification involving the addition of a methyl group to
DNA, which is heavily involved in gene expression and regulation, thereby critical to the …

Intrinsic stepwise translocation of stretched ssDNA in graphene nanopores

H Qiu, A Sarathy, JP Leburton, K Schulten - Nano letters, 2015 - ACS Publications
We investigate by means of molecular dynamics simulations stretch-induced stepwise
translocation of single-stranded DNA (ssDNA) through graphene nanopores. The intrinsic …

Salt-gradient approach for regulating capture-to-translocation dynamics of dna with nanochannel sensors

Y He, M Tsutsui, RH Scheicher, XS Miao… - Acs Sensors, 2016 - ACS Publications
Understanding the physical mechanisms that govern the ion and fluidic transport in salt-
concentration-based nanochannel/nanopore systems is essential for the potential …

Graphene nanopores for electronic recognition of DNA methylation

A Sarathy, H Qiu, JP Leburton - The Journal of Physical Chemistry …, 2017 - ACS Publications
We investigate theoretically the ability of graphene nanopore membranes to detect
methylated sites along a DNA molecule by electronic sheet current along the two …

[PDF][PDF] Synthesis and potential applications of nanoporous graphene: A review

X Wu, F Mu, H Zhao - Proc. Nat. Res. Soc, 2018 - researchgate.net
Nanoporous structures exhibit great application potential in the biosensing, energy storage
and other nanoelectronics. As a newly discovered 2D material with extraordinary properties …

Tunable graphene quantum point contact transistor for DNA detection and characterization

A Girdhar, C Sathe, K Schulten, JP Leburton - Nanotechnology, 2015 - iopscience.iop.org
A graphene membrane conductor containing a nanopore in a quantum point contact
geometry is a promising candidate to sense, and potentially sequence, DNA molecules …

Understanding the phosphorylation mechanism by using quantum chemical calculations and molecular dynamics simulations

W Han, J Zhu, S Wang, D Xu - The Journal of Physical Chemistry …, 2017 - ACS Publications
Phosphorylation is one of the most frequent post-translational modifications on proteins. It
regulates many cellular processes by modulation of phosphorylation on protein structure …