A Review of Holography in the Aquatic Sciences: In situ Characterization of Particles, Plankton, and Small Scale Biophysical Interactions

AR Nayak, E Malkiel, MN McFarland… - Frontiers in Marine …, 2021 - frontiersin.org
The characterization of particle and plankton populations, as well as microscale biophysical
interactions, is critical to several important research areas in oceanography and limnology. A …

Recent advances in experimental design and data analysis to characterize prokaryotic motility

MM Dubay, J Acres, M Riekeles, JL Nadeau - Journal of Microbiological …, 2023 - Elsevier
Bacterial motility plays a key role in important cell processes such as chemotaxis and biofilm
formation, but is challenging to quantify due to the small size of the individual …

Machine learning holography for 3D particle field imaging

S Shao, K Mallery, SS Kumar, J Hong - Optics Express, 2020 - opg.optica.org
We propose a new learning-based approach for 3D particle field imaging using holography.
Our approach uses a U-net architecture incorporating residual connections, Swish …

Glaciers and ice sheets as analog environments of potentially habitable icy worlds

E Garcia-Lopez, C Cid - Frontiers in microbiology, 2017 - frontiersin.org
Icy worlds in the solar system and beyond have attracted a remarkable attention as possible
habitats for life. The current consideration about whether life exists beyond Earth is based on …

Regularized inverse holographic volume reconstruction for 3D particle tracking

K Mallery, J Hong - Optics Express, 2019 - opg.optica.org
The key limitations of digital inline holography (DIH) for particle tracking applications are
poor longitudinal resolution, particle concentration limits, and case-specific processing. We …

Compact, lensless digital holographic microscope for remote microbiology

E Serabyn, K Liewer, C Lindensmith, K Wallace… - Optics express, 2016 - opg.optica.org
In situ investigation of microbial life in extreme environments can be carried out with
microscopes capable of imaging 3-dimensional volumes and tracking particle motion. Here …

Subsurface science and search for life in ocean worlds

JD Lawrence, AD Mullen, FE Bryson… - The Planetary …, 2023 - iopscience.iop.org
Several worlds in our solar system are thought to hold oceans of liquid water beneath their
frozen surfaces. These subsurface ice and ocean environments are promising targets in the …

In situ digital holographic microscopy for rapid detection and monitoring of the harmful dinoflagellate, Karenia brevis

R Barua, D Sanborn, L Nyman, M McFarland, T Moore… - Harmful Algae, 2023 - Elsevier
Karenia brevis blooms, also known as red tide, are a recurring problem in the coastal Gulf of
Mexico. These blooms have the capacity to inflict substantial damage to human and animal …

Enceladus as a potential oasis for life: Science goals and investigations for future explorations

G Choblet, G Tobie, A Buch, O Čadek, LM Barge… - Experimental …, 2022 - Springer
Enceladus is the first planetary object for which direct sampling of a subsurface water
reservoir, likely habitable, has been performed. Over a decade of flybys and seven …

Microbial morphology and motility as biosignatures for outer planet missions

J Nadeau, C Lindensmith, JW Deming, VI Fernandez… - Astrobiology, 2016 - liebertpub.com
Meaningful motion is an unambiguous biosignature, but because life in the Solar System is
most likely to be microbial, the question is whether such motion may be detected effectively …