Molecular mechanisms of disease-causing missense mutations
Genetic variations resulting in a change of amino acid sequence can have a dramatic effect
on stability, hydrogen bond network, conformational dynamics, activity and many other …
on stability, hydrogen bond network, conformational dynamics, activity and many other …
Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure
Most known pathogenic mutations occur in protein-coding regions of DNA and change the
way proteins are made. Taking protein structure into account has therefore provided great …
way proteins are made. Taking protein structure into account has therefore provided great …
Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes
Cancer is often driven by the accumulation of genetic alterations, including single nucleotide
variants, small insertions or deletions, gene fusions, copy-number variations, and large …
variants, small insertions or deletions, gene fusions, copy-number variations, and large …
OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes
D Tamborero, A Gonzalez-Perez… - Bioinformatics, 2013 - academic.oup.com
Motivation: Gain-of-function mutations often cluster in specific protein regions, a signal that
those mutations provide an adaptive advantage to cancer cells and consequently are …
those mutations provide an adaptive advantage to cancer cells and consequently are …
Comprehensive assessment of cancer missense mutation clustering in protein structures
A Kamburov, MS Lawrence, P Polak… - Proceedings of the …, 2015 - National Acad Sciences
Large-scale tumor sequencing projects enabled the identification of many new cancer gene
candidates through computational approaches. Here, we describe a general method to …
candidates through computational approaches. Here, we describe a general method to …
The 3D mutational constraint on amino acid sites in the human proteome
Quantification of the tolerance of protein sites to genetic variation has become a cornerstone
of variant interpretation. We hypothesize that the constraint on missense variation at …
of variant interpretation. We hypothesize that the constraint on missense variation at …
[HTML][HTML] Spatial clustering of de novo missense mutations identifies candidate neurodevelopmental disorder-associated genes
Haploinsufficiency (HI) is the best characterized mechanism through which dominant
mutations exert their effect and cause disease. Non-haploinsufficiency (NHI) mechanisms …
mutations exert their effect and cause disease. Non-haploinsufficiency (NHI) mechanisms …
Finding driver mutations in cancer: Elucidating the role of background mutational processes
Identifying driver mutations in cancer is notoriously difficult. To date, recurrence of a mutation
in patients remains one of the most reliable markers of mutation driver status. However …
in patients remains one of the most reliable markers of mutation driver status. However …
[HTML][HTML] The emerging potential for network analysis to inform precision cancer medicine
K Ozturk, M Dow, DE Carlin, R Bejar… - Journal of molecular …, 2018 - Elsevier
Precision cancer medicine promises to tailor clinical decisions to patients using genomic
information. Indeed, successes of drugs targeting genetic alterations in tumors, such as …
information. Indeed, successes of drugs targeting genetic alterations in tumors, such as …
Towards precision medicine: advances in computational approaches for the analysis of human variants
TA Peterson, E Doughty, MG Kann - Journal of molecular biology, 2013 - Elsevier
Variations and similarities in our individual genomes are part of our history, our heritage,
and our identity. Some human genomic variants are associated with common traits such as …
and our identity. Some human genomic variants are associated with common traits such as …