Assessing population structure: FST and related measures

PG Meirmans, PW Hedrick - Molecular ecology resources, 2011 - Wiley Online Library
Although FST is widely used as a measure of population structure, it has been criticized
recently because of its dependency on within‐population diversity. This dependency can …

Landscape genetics: combining landscape ecology and population genetics

S Manel, MK Schwartz, G Luikart, P Taberlet - Trends in ecology & …, 2003 - cell.com
Understanding the processes and patterns of gene flow and local adaptation requires a
detailed knowledge of how landscape characteristics structure populations. This …

genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

PG Meirmans - Molecular Ecology Resources, 2020 - Wiley Online Library
Abstract genodive version 3.0 is a user‐friendly program for the analysis of population
genetic data. This version presents a major update from the previous version and now offers …

dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

B Gruber, PJ Unmack, OF Berry… - Molecular ecology …, 2018 - Wiley Online Library
Although vast technological advances have been made and genetic software packages are
growing in number, it is not a trivial task to analyse SNP data. We announce a new r …

The cost of corrosion in China

B Hou, X Li, X Ma, C Du, D Zhang, M Zheng… - npj Materials …, 2017 - nature.com
Corrosion is a ubiquitous and costly problem for a variety of industries. Understanding and
reducing the cost of corrosion remain primary interests for corrosion professionals and …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

PopGenReport: simplifying basic population genetic analyses in R

AT Adamack, B Gruber - Methods in Ecology and Evolution, 2014 - Wiley Online Library
Using scripting languages such as R to perform population genetic analyses can improve
the reproducibility of research, but using R can be challenging for many researchers due to …

Testing for Hardy–Weinberg proportions: have we lost the plot?

RS Waples - Journal of heredity, 2015 - academic.oup.com
Abstract Testing for Hardy–Weinberg proportions (HWP) is routine in almost all genetic
studies of natural populations, but many researchers do not demonstrate a full …

Arlequin (version 3.0): an integrated software package for population genetics data analysis

L Excoffier, G Laval… - Evolutionary …, 2005 - journals.sagepub.com
Arlequin ver 3.0 is a software package integrating several basic and advanced methods for
population genetics data analysis, like the computation of standard genetic diversity indices …

hierfstat, a package for r to compute and test hierarchical F‐statistics

J Goudet - Molecular ecology notes, 2005 - Wiley Online Library
The package hierfstat for the statistical software r, created by the R Development Core
Team, allows the estimate of hierarchical F‐statistics from a hierarchy with any numbers of …