Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics
K Arikawa, K Ide, M Kogawa, T Saeki, T Yoda, T Endoh… - Microbiome, 2021 - Springer
Background Obtaining high-quality (HQ) reference genomes from microbial communities is
crucial for understanding the phylogeny and function of uncultured microbes in complex …
crucial for understanding the phylogeny and function of uncultured microbes in complex …
[HTML][HTML] Contamination of antibiotics and sul and tet (M) genes in veterinary wastewater, river, and coastal sea in Thailand
Abstract Water systems in Southeast Asia accumulate antibiotics and antibiotic resistance
genes (ARGs) from multiple origins, notably including human clinics and animal farms. To …
genes (ARGs) from multiple origins, notably including human clinics and animal farms. To …
Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing
M Kogawa, Y Nishikawa, T Saeki, T Yoda… - Frontiers in …, 2023 - frontiersin.org
Obtaining complete and accurate bacterial genomes is vital for studying the characteristics
of uncultured bacteria. Single-cell genomics is a promising approach for the culture …
of uncultured bacteria. Single-cell genomics is a promising approach for the culture …
Male-killing-associated bacteriophage WO identified from comparisons of Wolbachia endosymbionts of Homona magnanima
The origin and mechanism of male-killing, an advantageous strategy employed by
maternally transmitted symbionts such as Wolbachia, remain unclear. We compared …
maternally transmitted symbionts such as Wolbachia, remain unclear. We compared …
Recovery of high-quality assembled genomes via metagenome binning guided with single-cell amplified genomes
K Arikawa, K Ide, M Kogawa, T Saeki, T Yoda, T Endoh… - BioRxiv, 2021 - biorxiv.org
Background Obtaining high-quality (HQ) reference genomes from microbial communities is
crucial for understanding the phylogeny and function of uncultured microbes in complex …
crucial for understanding the phylogeny and function of uncultured microbes in complex …