Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Statistics and truth in phylogenomics
Phylogenomics refers to the inference of historical relationships among species using
genome-scale sequence data and to the use of phylogenetic analysis to infer protein …
genome-scale sequence data and to the use of phylogenetic analysis to infer protein …
Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae …
Understanding of the phylogeny and interrelationships of the genera within the order
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …
Revisiting metazoan phylogeny with genomic sampling of all phyla
Proper biological interpretation of a phylogeny can sometimes hinge on the placement of
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …
Terrace aware data structure for phylogenomic inference from supermatrices
In phylogenomics the analysis of concatenated gene alignments, the so-called supermatrix,
is commonly accompanied by the assumption of partition models. Under such models each …
is commonly accompanied by the assumption of partition models. Under such models each …
[图书][B] Computational molecular evolution
Z Yang - 2006 - books.google.com
The field of molecular evolution has experienced explosive growth in recent years due to the
rapid accumulation of genetic sequence data, continuous improvements to computer …
rapid accumulation of genetic sequence data, continuous improvements to computer …
[PDF][PDF] Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
Alkatib, S., Scharff, LB, Rogalski, M., Fleischmann, TT, Matthes, A., Seeger, S., Schöttler, MA,
Ruf, S. & Bock, R.(2012) The contributions of wobbling and superwobbling to the reading of …
Ruf, S. & Bock, R.(2012) The contributions of wobbling and superwobbling to the reading of …
A critical appraisal of the placement of Xiphosura (Chelicerata) with account of known sources of phylogenetic error
JA Ballesteros, PP Sharma - Systematic Biology, 2019 - academic.oup.com
Horseshoe crabs (Xiphosura) are traditionally regarded as sister group to the clade of
terrestrial chelicerates (Arachnida). This hypothesis has been challenged by recent …
terrestrial chelicerates (Arachnida). This hypothesis has been challenged by recent …
Taxon sampling and the accuracy of phylogenetic analyses
Appropriate and extensive taxon sampling is one of the most important determinants of
accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary …
accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary …