A synthetic protein-level neural network in mammalian cells
Artificial neural networks provide a powerful paradigm for nonbiological information
processing. To understand whether similar principles could enable computation within living …
processing. To understand whether similar principles could enable computation within living …
Empowering Chemical AI Through Systems Chemistry
PL Gentili, P Stano - ChemSystemsChem, 2024 - Wiley Online Library
This work presents some ambitious perspectives on how Systems Chemistry can contribute
to developing the quite new research line of Chemical Artificial Intelligence (CAI). CAI refers …
to developing the quite new research line of Chemical Artificial Intelligence (CAI). CAI refers …
Exploring the programmability of autocatalytic chemical reaction networks
Networks of chemical reactions exhibit emergent properties under out-of-equilibrium
conditions. Recent advances in systems chemistry demonstrate that networks with sufficient …
conditions. Recent advances in systems chemistry demonstrate that networks with sufficient …
A pseudo‐catalytic network motif for thiol‐based chemical reaction networks
EA Zhigileva, IA Puchkin, SN Semenov - ChemSystemsChem, 2024 - Wiley Online Library
The construction of chemical reaction networks (CRNs) is a formidable challenge because
of their holistic and nonlinear nature. One approach to constructing CRNs involves …
of their holistic and nonlinear nature. One approach to constructing CRNs involves …
Circuit design in biology and machine learning. I. Random networks and dimensional reduction
SA Frank - arXiv preprint arXiv:2408.09604, 2024 - arxiv.org
A biological circuit is a neural or biochemical cascade, taking inputs and producing outputs.
How have biological circuits learned to solve environmental challenges over the history of …
How have biological circuits learned to solve environmental challenges over the history of …
Reservoir Computing with Bacteria
JL Faulon, P Ahavi, A Hoang - bioRxiv, 2024 - biorxiv.org
This study explores the use of bacterial strains in reservoir computing (RC) to solve
regression and classification tasks. We employ an Escherichia coli K-12 MG1655 strain as …
regression and classification tasks. We employ an Escherichia coli K-12 MG1655 strain as …
Case studies of dimensionality in chemical data
A Blokhuis, R Pollice - European Journal of Organic Chemistry - Wiley Online Library
The ambition to relate intrinsic features of chemical data to the underlying chemical reaction
networks (CRNs) is not new, but has experienced only modest success. This may partly be …
networks (CRNs) is not new, but has experienced only modest success. This may partly be …
RULE-IT: AN ONLINE PLATFORM FOR REACTION NETWORK EXPLORATIONS FOR CHEMICAL EVOLUTION
B Cuevas-Zuviria, T Sokolskyi - 2024 - chemrxiv.org
Exploring the chemical space of prebiotic reactions is crucial for understanding the
emergence of life. However, the combinatorial explosion of compounds and the lack of user …
emergence of life. However, the combinatorial explosion of compounds and the lack of user …