Signaling pathways in cancer metabolism: mechanisms and therapeutic targets
M You, Z Xie, N Zhang, Y Zhang, D Xiao, S Liu… - … and Targeted Therapy, 2023 - nature.com
A wide spectrum of metabolites (mainly, the three major nutrients and their derivatives) can
be sensed by specific sensors, then trigger a series of signal transduction pathways and …
be sensed by specific sensors, then trigger a series of signal transduction pathways and …
Chromatin accessibility: a window into the genome
M Tsompana, MJ Buck - Epigenetics & chromatin, 2014 - Springer
Transcriptional activation throughout the eukaryotic lineage has been tightly linked with
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …
Genome-wide enhancer maps link risk variants to disease genes
Genome-wide association studies (GWAS) have identified thousands of noncoding loci that
are associated with human diseases and complex traits, each of which could reveal insights …
are associated with human diseases and complex traits, each of which could reveal insights …
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
AD Yates, J Allen, RM Amode, AG Azov… - Nucleic acids …, 2022 - academic.oup.com
Abstract Ensembl Genomes (https://www. ensemblgenomes. org) provides access to non-
vertebrate genomes and analysis complementing vertebrate resources developed by the …
vertebrate genomes and analysis complementing vertebrate resources developed by the …
The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer
AI Kraemer, C Chong, F Huber, HS Pak, BJ Stevenson… - Nature cancer, 2023 - nature.com
One key barrier to improving efficacy of personalized cancer immunotherapies that are
dependent on the tumor antigenic landscape remains patient stratification. Although patients …
dependent on the tumor antigenic landscape remains patient stratification. Although patients …
[HTML][HTML] Nrf2 suppresses macrophage inflammatory response by blocking proinflammatory cytokine transcription
EH Kobayashi, T Suzuki, R Funayama… - Nature …, 2016 - nature.com
Abstract Nrf2 (NF-E2-related factor-2) transcription factor regulates oxidative/xenobiotic
stress response and also represses inflammation. However, the mechanisms how Nrf2 …
stress response and also represses inflammation. However, the mechanisms how Nrf2 …
A general framework for estimating the relative pathogenicity of human genetic variants
Current methods for annotating and interpreting human genetic variation tend to exploit a
single information type (for example, conservation) and/or are restricted in scope (for …
single information type (for example, conservation) and/or are restricted in scope (for …
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Recent developments in stem cell biology have enabled the study of cell fate decisions in
early human development that are impossible to study in vivo. However, understanding how …
early human development that are impossible to study in vivo. However, understanding how …
In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9
L Swiech, M Heidenreich, A Banerjee, N Habib… - Nature …, 2015 - nature.com
Probing gene function in the mammalian brain can be greatly assisted with methods to
manipulate the genome of neurons in vivo. The clustered, regularly interspaced, short …
manipulate the genome of neurons in vivo. The clustered, regularly interspaced, short …
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
AA Pollen, TJ Nowakowski, J Shuga, X Wang… - Nature …, 2014 - nature.com
Large-scale surveys of single-cell gene expression have the potential to reveal rare cell
populations and lineage relationships but require efficient methods for cell capture and …
populations and lineage relationships but require efficient methods for cell capture and …