Signaling pathways in cancer metabolism: mechanisms and therapeutic targets

M You, Z Xie, N Zhang, Y Zhang, D Xiao, S Liu… - … and Targeted Therapy, 2023 - nature.com
A wide spectrum of metabolites (mainly, the three major nutrients and their derivatives) can
be sensed by specific sensors, then trigger a series of signal transduction pathways and …

Chromatin accessibility: a window into the genome

M Tsompana, MJ Buck - Epigenetics & chromatin, 2014 - Springer
Transcriptional activation throughout the eukaryotic lineage has been tightly linked with
disruption of nucleosome organization at promoters, enhancers, silencers, insulators and …

Genome-wide enhancer maps link risk variants to disease genes

J Nasser, DT Bergman, CP Fulco, P Guckelberger… - Nature, 2021 - nature.com
Genome-wide association studies (GWAS) have identified thousands of noncoding loci that
are associated with human diseases and complex traits, each of which could reveal insights …

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates

AD Yates, J Allen, RM Amode, AG Azov… - Nucleic acids …, 2022 - academic.oup.com
Abstract Ensembl Genomes (https://www. ensemblgenomes. org) provides access to non-
vertebrate genomes and analysis complementing vertebrate resources developed by the …

The immunopeptidome landscape associated with T cell infiltration, inflammation and immune editing in lung cancer

AI Kraemer, C Chong, F Huber, HS Pak, BJ Stevenson… - Nature cancer, 2023 - nature.com
One key barrier to improving efficacy of personalized cancer immunotherapies that are
dependent on the tumor antigenic landscape remains patient stratification. Although patients …

[HTML][HTML] Nrf2 suppresses macrophage inflammatory response by blocking proinflammatory cytokine transcription

EH Kobayashi, T Suzuki, R Funayama… - Nature …, 2016 - nature.com
Abstract Nrf2 (NF-E2-related factor-2) transcription factor regulates oxidative/xenobiotic
stress response and also represses inflammation. However, the mechanisms how Nrf2 …

A general framework for estimating the relative pathogenicity of human genetic variants

M Kircher, DM Witten, P Jain, BJ O'roak, GM Cooper… - Nature …, 2014 - nature.com
Current methods for annotating and interpreting human genetic variation tend to exploit a
single information type (for example, conservation) and/or are restricted in scope (for …

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

ASE Cuomo, DD Seaton, DJ McCarthy… - Nature …, 2020 - nature.com
Recent developments in stem cell biology have enabled the study of cell fate decisions in
early human development that are impossible to study in vivo. However, understanding how …

In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9

L Swiech, M Heidenreich, A Banerjee, N Habib… - Nature …, 2015 - nature.com
Probing gene function in the mammalian brain can be greatly assisted with methods to
manipulate the genome of neurons in vivo. The clustered, regularly interspaced, short …

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

AA Pollen, TJ Nowakowski, J Shuga, X Wang… - Nature …, 2014 - nature.com
Large-scale surveys of single-cell gene expression have the potential to reveal rare cell
populations and lineage relationships but require efficient methods for cell capture and …