Short linear motifs in colorectal cancer interactome and tumorigenesis
C Fasano, V Grossi, G Forte, C Simone - Cells, 2022 - mdpi.com
Colorectal tumorigenesis is driven by alterations in genes and proteins responsible for
cancer initiation, progression, and invasion. This multistage process is based on a dense …
cancer initiation, progression, and invasion. This multistage process is based on a dense …
How do disordered regions achieve comparable functions to structured domains?
The traditional structure to function paradigm conceives of a protein's function as emerging
from its structure. In recent years, it has been established that unstructured, intrinsically …
from its structure. In recent years, it has been established that unstructured, intrinsically …
Human VAPome analysis reveals MOSPD1 and MOSPD3 as membrane contact site proteins interacting with FFAT-related FFNT motifs
B Cabukusta, I Berlin, DM van Elsland, I Forkink… - Cell Reports, 2020 - cell.com
Membrane contact sites (MCS) are intracellular regions where two organelles come closer
to exchange information and material. The majority of the endoplasmic reticulum (ER) MCS …
to exchange information and material. The majority of the endoplasmic reticulum (ER) MCS …
Systematic prediction of FFAT motifs across eukaryote proteomes identifies nucleolar and eisosome proteins with the predicted capacity to form bridges to the …
JA Slee, TP Levine - Contact, 2019 - journals.sagepub.com
The endoplasmic reticulum (ER), the most pervasive organelle, exchanges information and
material with many other organelles, but the extent of its interorganelle connections and the …
material with many other organelles, but the extent of its interorganelle connections and the …
Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets
Motivation: Proteins often recognize their interaction partners on the basis of short linear
motifs located in disordered regions on proteins' surface. Experimental techniques that study …
motifs located in disordered regions on proteins' surface. Experimental techniques that study …
Structural prediction of protein interactions and docking using conservation and coevolution
J Andreani, C Quignot, R Guerois - Wiley Interdisciplinary …, 2020 - Wiley Online Library
Abstract Knowledge of the detailed structure of macromolecular interactions is key to a better
understanding and modulation of essential cellular functions and pathological situations …
understanding and modulation of essential cellular functions and pathological situations …
LMPID: A manually curated database of linear motifs mediating protein–protein interactions
Linear motifs (LMs), used by a subset of all protein–protein interactions (PPIs), bind to
globular receptors or domains and play an important role in signaling networks. LMPID …
globular receptors or domains and play an important role in signaling networks. LMPID …
Controllability of protein-protein interaction phosphorylation-based networks: Participation of the hub 14-3-3 protein family
Posttranslational regulation of protein function is an ubiquitous mechanism in eukaryotic
cells. Here, we analyzed biological properties of nodes and edges of a human protein …
cells. Here, we analyzed biological properties of nodes and edges of a human protein …
Thousands of protein linear motif classes may still be undiscovered
Linear motifs are short protein subsequences that mediate protein interactions. Hundreds of
motif classes including thousands of motif instances are known. Our theory estimates how …
motif classes including thousands of motif instances are known. Our theory estimates how …
K-shell analysis reveals distinct functional parts in an electron transfer network and its implications for extracellular electron transfer
D Ding, L Li, C Shu, X Sun - Frontiers in microbiology, 2016 - frontiersin.org
Shewanella oneidensis MR-1 is capable of extracellular electron transfer (EET) and hence
has attracted considerable attention. The EET pathways mainly consist of c-type …
has attracted considerable attention. The EET pathways mainly consist of c-type …