When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches
V Munoz, M Cerminara - Biochemical Journal, 2016 - portlandpress.com
Protein folding research stalled for decades because conventional experiments indicated
that proteins fold slowly and in single strokes, whereas theory predicted a complex interplay …
that proteins fold slowly and in single strokes, whereas theory predicted a complex interplay …
Limited cooperativity in protein folding
Theory and simulations predict that the structural concert of protein folding reactions is
relatively low. Experimentally, folding cooperativity has been difficult to study, but in recent …
relatively low. Experimentally, folding cooperativity has been difficult to study, but in recent …
Modern analysis of protein folding by differential scanning calorimetry
B Ibarra-Molero, AN Naganathan… - Methods in …, 2016 - Elsevier
Differential scanning calorimetry (DSC) is a very powerful tool for investigating protein
folding and stability because its experimental output reflects the energetics of all …
folding and stability because its experimental output reflects the energetics of all …
Thermally versus chemically denatured protein states
Protein unfolding thermodynamic parameters are conventionally extracted from equilibrium
thermal and chemical denaturation experiments. Despite decades of work, the degree of …
thermal and chemical denaturation experiments. Despite decades of work, the degree of …
“Invisible” conformers of an antifungal disulfide protein revealed by constrained cold and heat unfolding, CEST‐NMR experiments, and molecular dynamics …
Á Fizil, Z Gáspári, T Barna, F Marx… - Chemistry–A European …, 2015 - Wiley Online Library
Transition between conformational states in proteins is being recognized as a possible key
factor of function. In support of this, hidden dynamic NMR structures were detected in several …
factor of function. In support of this, hidden dynamic NMR structures were detected in several …
The Wako-Saitô-Muñoz-Eaton model for predicting protein folding and dynamics
K Ooka, R Liu, M Arai - Molecules, 2022 - mdpi.com
Despite the recent advances in the prediction of protein structures by deep neutral networks,
the elucidation of protein-folding mechanisms remains challenging. A promising theory for …
the elucidation of protein-folding mechanisms remains challenging. A promising theory for …
[HTML][HTML] Thermodynamics and folding landscapes of large proteins from a statistical mechanical model
Statistical mechanical models that afford an intermediate resolution between macroscopic
chemical models and all-atom simulations have been successful in capturing folding …
chemical models and all-atom simulations have been successful in capturing folding …
Lessons about protein folding and binding from archetypal folds
Conspectus The function of proteins as biological nanomachines relies on their ability to fold
into complex 3D structures, bind selectively to partners, and undergo conformational …
into complex 3D structures, bind selectively to partners, and undergo conformational …
Concurrent increases and decreases in local stability and conformational heterogeneity in Cu, Zn superoxide dismutase variants revealed by temperature …
CM Doyle, JA Rumfeldt, HR Broom, A Sekhar… - Biochemistry, 2016 - ACS Publications
The chemical shifts of backbone amide protons in proteins are sensitive reporters of local
structural stability and conformational heterogeneity, which can be determined from their …
structural stability and conformational heterogeneity, which can be determined from their …
Highly heterogeneous nature of the native and unfolded states of the B domain of protein a revealed by two-dimensional fluorescence lifetime correlation …
Elucidating the protein folding mechanism is crucial to understand how proteins acquire
their unique structures to realize various biological functions. With this aim, the …
their unique structures to realize various biological functions. With this aim, the …