Comparative protein structure modeling of genes and genomes

MA Martí-Renom, AC Stuart, A Fiser… - Annual review of …, 2000 - annualreviews.org
▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …

[HTML][HTML] Homology modeling a fast tool for drug discovery: current perspectives

VK Vyas, RD Ukawala, M Ghate… - Indian journal of …, 2012 - ncbi.nlm.nih.gov
Major goal of structural biology involve formation of protein-ligand complexes; in which the
protein molecules act energetically in the course of binding. Therefore, perceptive of protein …

Comparative protein structure modeling using MODELLER

B Webb, A Sali - Current protocols in bioinformatics, 2016 - Wiley Online Library
Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

Comparative protein modelling by satisfaction of spatial restraints

A Šali, TL Blundell - Journal of molecular biology, 1993 - Elsevier
We describe a comparative protein modelling method designed to find the most probable
structure for a sequence given its alignment with related structures. The three dimensional …

Scoring function for automated assessment of protein structure template quality

Y Zhang, J Skolnick - Proteins: Structure, Function, and …, 2004 - Wiley Online Library
We have developed a new scoring function, the template modeling score (TM‐score), to
assess the quality of protein structure templates and predicted full‐length models by …

Modeller: generation and refinement of homology-based protein structure models

A Fiser, A Šali - Methods in enzymology, 2003 - Elsevier
Publisher Summary Functional characterization of a protein sequence is one of the most
frequent problems in biology. This task is usually facilitated by accurate three-dimensional …

Protein structure prediction and structural genomics

D Baker, A Sali - Science, 2001 - science.org
Genome sequencing projects are producing linear amino acid sequences, but full
understanding of the biological role of these proteins will require knowledge of their …

Comparative protein modeling by satisfaction of spatial restraints

A ⩽ ali - Molecular medicine today, 1995 - Elsevier
Approximately one third of known protein sequences are related to at least one known
protein structure. As a result, an order of magnitude more sequences can be modeled by …

Advances in comparative protein-structure modelling

R Sanchez, A Šali - Current opinion in structural biology, 1997 - Elsevier
Comparative modelling of protein 3D structure can now be applied with reasonable
accuracy to ten times more protein sequences than the number of experimentally …

Knowledge-based protein modeling

MS Johnson, N Srinivasan, R Sowdhamini… - Critical reviews in …, 1994 - Taylor & Francis
Abstract Knowledge, both from the three-dimensional structures of homologous proteins and
from the general analysis of protein structure, is of value in modeling a protein of known …