Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs

K Palos, L Yu, CE Railey, AC Nelson Dittrich… - The Plant …, 2023 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a large and diverse class of genes in eukaryotic
genomes that contribute to a variety of regulatory processes. Functionally characterized …

Long non-coding RNAs of plants in response to abiotic stresses and their regulating roles in promoting environmental adaption

H Yang, Y Cui, Y Feng, Y Hu, L Liu, L Duan - Cells, 2023 - mdpi.com
Abiotic stresses triggered by climate change and human activity cause substantial
agricultural and environmental problems which hamper plant growth. Plants have evolved …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

A foundational large language model for edible plant genomes

J Mendoza-Revilla, E Trop, L Gonzalez… - Communications …, 2024 - nature.com
Significant progress has been made in the field of plant genomics, as demonstrated by the
increased use of high-throughput methodologies that enable the characterization of multiple …

Evaluation of efficacy of non-coding RNA in abiotic stress management of field crops: Current status and future prospective

S Hazra, D Moulick, A Mukherjee, S Sahib… - Plant Physiology and …, 2023 - Elsevier
Abiotic stresses are responsible for the major losses in crop yield all over the world. Stresses
generate harmful ROS which can impair cellular processes in plants. Therefore, plants have …

Non-coding RNAs (ncRNAs) in plants: Master regulators for adapting to extreme temperature conditions

UC Jha, H Nayyar, R Roychowdhury… - Plant Physiology and …, 2023 - Elsevier
Unusual daily temperature fluctuations caused by climate change and climate variability
adversely impact agricultural crop production. Since plants are immobile and constantly …

Gypsy retrotransposon‐derived maize lncRNA GARR2 modulates gibberellin response

W Li, Y Chen, Y Wang, J Zhao, Y Wang - The Plant Journal, 2022 - Wiley Online Library
Long non‐coding RNAs (lncRNAs) mediate diverse biological events mainly through the
modulation of transcriptional hierarchy. The phytohormone gibberellin (GA) is essential for …

Biogenesis, functions, interactions, and resources of non-coding RNAs in plants

H Chao, Y Hu, L Zhao, S Xin, Q Ni, P Zhang… - International Journal of …, 2022 - mdpi.com
Plant transcriptomes encompass a large number of functional non-coding RNAs (ncRNAs),
only some of which have protein-coding capacity. Since their initial discovery, ncRNAs have …

Genome‐wide association study and network analysis of in vitro transformation in Populus trichocarpa support key roles of diverse phytohormone pathways and …

MF Nagle, J Yuan, D Kaur, C Ma… - New …, 2024 - Wiley Online Library
Wide variation in amenability to transformation and regeneration (TR) among many plant
species and genotypes presents a challenge to the use of genetic engineering in research …

CANTATAdb 3.0: An Updated Repository of Plant Long Non-Coding RNAs

MW Szcześniak, E Wanowska - Plant and Cell Physiology, 2024 - academic.oup.com
CANTATAdb 3.0 is an updated database of plant long non-coding RNAs (lncRNAs),
containing 571,688 lncRNAs identified across 108 species, including 100 Magnoliopsida …