Genetic load: genomic estimates and applications in non-model animals

G Bertorelle, F Raffini, M Bosse, C Bortoluzzi… - Nature Reviews …, 2022 - nature.com
Genetic variation, which is generated by mutation, recombination and gene flow, can reduce
the mean fitness of a population, both now and in the future. This 'genetic load'has been …

The evolutionary origin of orphan genes

D Tautz, T Domazet-Lošo - Nature Reviews Genetics, 2011 - nature.com
Gene evolution has long been thought to be primarily driven by duplication and
rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes …

[HTML][HTML] Landscape of X chromosome inactivation across human tissues

T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall… - Nature, 2017 - nature.com
X chromosome inactivation (XCI) silences transcription from one of the two X chromosomes
in female mammalian cells to balance expression dosage between XX females and XY …

The genetic landscape of a cell

M Costanzo, A Baryshnikova, J Bellay, Y Kim… - science, 2010 - science.org
A genome-scale genetic interaction map was constructed by examining 5.4 million gene-
gene pairs for synthetic genetic interactions, generating quantitative genetic interaction …

The quantitative proteome of a human cell line

M Beck, A Schmidt, J Malmstroem… - Molecular systems …, 2011 - embopress.org
The generation of mathematical models of biological processes, the simulation of these
processes under different conditions, and the comparison and integration of multiple data …

Proto-genes and de novo gene birth

AR Carvunis, T Rolland, I Wapinski, MA Calderwood… - Nature, 2012 - nature.com
Novel protein-coding genes can arise either through re-organization of pre-existing genes or
de novo,. Processes involving re-organization of pre-existing genes, notably after gene …

Determinants of the rate of protein sequence evolution

J Zhang, JR Yang - Nature Reviews Genetics, 2015 - nature.com
The rate and mechanism of protein sequence evolution have been central questions in
evolutionary biology since the 1960s. Although the rate of protein sequence evolution …

[HTML][HTML] Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus

FS Barreto, ET Watson, TG Lima, CS Willett… - Nature ecology & …, 2018 - nature.com
The copepod Tigriopus californicus shows extensive population divergence and is
becoming a model for understanding allopatric differentiation and the early stages of …

[HTML][HTML] Evolution of genes and genomes on the Drosophila phylogeny

AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver… - Nature, 2007 - hal.science
Comparative analysis of multiple genomes in a phylogenetic framework dramatically
improves the precision and sensitivity of evolutionary inference, producing more robust …

The protein folding problem: the role of theory

R Nassar, GL Dignon, RM Razban, KA Dill - Journal of molecular biology, 2021 - Elsevier
The protein folding problem was first articulated as question of how order arose from
disorder in proteins: How did the various native structures of proteins arise from interatomic …