Machine-learning methods for ligand–protein molecular docking

K Crampon, A Giorkallos, M Deldossi, S Baud… - Drug discovery today, 2022 - Elsevier
Artificial intelligence (AI) is often presented as a new Industrial Revolution. Many domains
use AI, including molecular simulation for drug discovery. In this review, we provide an …

New era of artificial intelligence and machine learning-based detection, diagnosis, and therapeutics in Parkinson's disease

R Gupta, S Kumari, A Senapati, RK Ambasta… - Ageing research …, 2023 - Elsevier
Parkinson's disease (PD) is characterized by the loss of neuronal cells, which leads to
synaptic dysfunction and cognitive defects. Despite the advancements in treatment …

The Omicron (B. 1.1. 529) variant of SARS-CoV-2 binds to the hACE2 receptor more strongly and escapes the antibody response: Insights from structural and …

A Khan, H Waris, M Rafique, M Suleman… - International journal of …, 2022 - Elsevier
Abstract As SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) continues to
inflict chaos globally, a new variant officially known as B. 1.1. 529 was reported in South …

Deep learning tools for advancing drug discovery and development

S Nag, ATK Baidya, A Mandal, AT Mathew, B Das… - 3 Biotech, 2022 - Springer
A few decades ago, drug discovery and development were limited to a bunch of medicinal
chemists working in a lab with enormous amount of testing, validations, and synthetic …

Virtual screening-driven drug discovery of SARS-CoV2 enzyme inhibitors targeting viral attachment, replication, post-translational modification and host immunity …

MTJ Quimque, KIR Notarte… - Journal of …, 2021 - Taylor & Francis
The novel coronavirus SARS-CoV2, the causative agent of the pandemic disease COVID-
19, emerged in December 2019 forcing lockdown of communities in many countries. The …

Phylogenetic analysis and structural perspectives of RNA-dependent RNA-polymerase inhibition from SARs-CoV-2 with natural products

A Khan, M Khan, S Saleem, Z Babar, A Ali… - Interdisciplinary …, 2020 - Springer
Most recently, an outbreak of severe pneumonia caused by the infection of SARS-CoV-2, a
novel coronavirus first identified in Wuhan, China, imposes serious threats to public health …

Combined drug repurposing and virtual screening strategies with molecular dynamics simulation identified potent inhibitors for SARS-CoV-2 main protease (3CLpro)

A Khan, SS Ali, MT Khan, S Saleem, A Ali… - Journal of …, 2021 - Taylor & Francis
The current coronavirus (SARS-COV-2) pandemic and phenomenal spread to every nook
and cranny of the world has raised major apprehensions about the modern public health …

Computer-aided drug design towards new psychotropic and neurological drugs

G Dorahy, JZ Chen, T Balle - Molecules, 2023 - mdpi.com
Central nervous system (CNS) disorders are a therapeutic area in drug discovery where
demand for new treatments greatly exceeds approved treatment options. This is complicated …

Structure-based design of promising natural products to inhibit thymidylate kinase from Monkeypox virus and validation using free energy calculations

A Khan, S Adil, HA Qudsia, Y Waheed… - Computers in Biology …, 2023 - Elsevier
Monkeypox (MPXV) is a globally growing public health concern with 80,328 active cases
and 53 deaths have been reported. No specific vaccine or drug is available for the treatment …

Blocking key mutated hotspot residues in the RBD of the omicron variant (B. 1.1. 529) with medicinal compounds to disrupt the RBD-hACE2 complex using molecular …

A Khan, AYW Randhawa, AR Balouch, N Mukhtar… - RSC …, 2022 - pubs.rsc.org
A new variant of SARS-CoV-2 known as the omicron variant (B. 1.1. 529) reported in South
Africa with 30 mutations in the whole spike protein, among which 15 mutations are in the …