Grammarviz 3.0: Interactive discovery of variable-length time series patterns

P Senin, J Lin, X Wang, T Oates, S Gandhi… - ACM Transactions on …, 2018 - dl.acm.org
The problems of recurrent and anomalous pattern discovery in time series, eg, motifs and
discords, respectively, have received a lot of attention from researchers in the past decade …

Visualizing variable-length time series motifs

Y Li, J Lin, T Oates - Proceedings of the 2012 SIAM international conference …, 2012 - SIAM
The problem of time series motif discovery has received a lot of attention from researchers in
the past decade. Most existing work on finding time series motifs require that the length of …

Approximate variable-length time series motif discovery using grammar inference

Y Li, J Lin - Proceedings of the Tenth International Workshop on …, 2010 - dl.acm.org
The problem of identifying frequently occurring patterns, or motifs, in time series data has
received a lot of attention in the past few years. Most existing work on finding time series …

Finding approximate frequent patterns in streaming medical data

J Lin, Y Li - 2010 IEEE 23rd International Symposium on …, 2010 - ieeexplore.ieee.org
Time series data is ubiquitous and plays an important role in virtually every domain. For
example, in medicine, the advancement of computer technology has enabled more …

phraider: Pattern-hunter based rapid ab initio detection of elementary repeats

CE Schaeffer, ND Figueroa, X Liu, JE Karro - Bioinformatics, 2016 - academic.oup.com
Abstract Motivation: Transposable elements (TEs) and repetitive DNA make up a sizable
fraction of Eukaryotic genomes, and their annotation is crucial to the study of the structure …

Differential sequential patterns supporting insulin therapy of new-onset type 1 diabetes

R Deja, W Froelich, GŻ Deja - Biomedical engineering online, 2015 - Springer
Background In spite of numerous research efforts on supporting the therapy of diabetes
mellitus, the subject still involves challenges and creates active interest among researchers …

A novel k-word relative measure for sequence comparison

J Tang, K Hua, M Chen, R Zhang, X Xie - Computational biology and …, 2014 - Elsevier
In order to extract phylogenetic information from DNA sequences, the new normalized k-
word average relative distance is proposed in this paper. The proposed measure was tested …

[PDF][PDF] 犇犖犃序列中基于适应性后缀树的重复体识别算法

霍红卫, 王小武 - 计算机学报, 2010 - cjc.ict.ac.cn
摘要现有的在DNA 序列中识别重复体的算法多数是基于比对的, 对识别速度和吞吐量有很大的
限制. 针对这个问题文中根据一个平衡重复体的长度和频率的定义, 提出了一种基于Ukkonen …

[HTML][HTML] Counter based suffix tree for DNA pattern repeats

TK Gobonamang, D Mpoeleng - Theoretical Computer Science, 2020 - Elsevier
In recent years, the string datasets have increased exponentially, so is the need to process
them. Most of these datasets have been deeply rooted in the field of bioinformatics since the …

An alignment-free measure based on physicochemical properties of amino acids for protein sequence comparison

Y Zhao, X Xue, X Xie - Computational biology and chemistry, 2019 - Elsevier
Sequence comparison is an important topic in bioinformatics. With the exponential increase
of biological sequences, the traditional protein sequence comparison methods—the …