The organization of the bacterial genome
EPC Rocha - Annual review of genetics, 2008 - annualreviews.org
Many bacterial cellular processes interact intimately with the chromosome. Such interplay is
the major driving force of genome structure or organization. Interactions take place at …
the major driving force of genome structure or organization. Interactions take place at …
Genome architecture and global gene regulation in bacteria: making progress towards a unified model?
CJ Dorman - Nature Reviews Microbiology, 2013 - nature.com
Data obtained with advanced imaging techniques, chromosome conformation capture
methods, bioinformatics and molecular genetics, together with insights from polymer physics …
methods, bioinformatics and molecular genetics, together with insights from polymer physics …
DNA supercoiling—a global transcriptional regulator for enterobacterial growth?
A Travers, G Muskhelishvili - Nature Reviews Microbiology, 2005 - nature.com
A fundamental principle of exponential bacterial growth is that no more ribosomes are
produced than are necessary to support the balance between nutrient availability and …
produced than are necessary to support the balance between nutrient availability and …
The roles of nucleoid-associated proteins and topoisomerases in chromosome structure, strand segregation, and the generation of phenotypic heterogeneity in …
V Norris, C Kayser, G Muskhelishvili… - FEMS Microbiology …, 2023 - academic.oup.com
How to adapt to a changing environment is a fundamental, recurrent problem confronting
cells. One solution is for cells to organize their constituents into a limited number of spatially …
cells. One solution is for cells to organize their constituents into a limited number of spatially …
How gene order is influenced by the biophysics of transcription regulation
G Kolesov, Z Wunderlich, ON Laikova… - Proceedings of the …, 2007 - National Acad Sciences
What are the forces that shape the structure of prokaryotic genomes: the order of genes, their
proximity, and their orientation? Coregulation and coordinated horizontal gene transfer are …
proximity, and their orientation? Coregulation and coordinated horizontal gene transfer are …
Regulatory consequences of gene translocation in bacteria
DHS Block, R Hussein, LW Liang… - Nucleic acids …, 2012 - academic.oup.com
Gene translocations play an important role in the plasticity and evolution of bacterial
genomes. In this study, we investigated the impact on gene regulation of three genome …
genomes. In this study, we investigated the impact on gene regulation of three genome …
From single-particle stochastic kinetics to macroscopic reaction rates: fastest first-passage time of N random walkers
We consider the first-passage problem for N identical independent particles that are initially
released uniformly in a finite domain Ω and then diffuse toward a reactive area Γ, which can …
released uniformly in a finite domain Ω and then diffuse toward a reactive area Γ, which can …
Bacterial chromatin
A Travers, G Muskhelishvili - Current opinion in genetics & development, 2005 - Elsevier
Recent studies have revealed that the bacterial nucleoid is a dynamic entity that alters its
overall structure in response to changes in both growth rate and growth phase. These …
overall structure in response to changes in both growth rate and growth phase. These …
From artificial evolution to computational evolution: a research agenda
Computational scientists have developed algorithms inspired by natural evolution for at least
50 years. These algorithms solve optimization and design problems by building solutions …
50 years. These algorithms solve optimization and design problems by building solutions …