[HTML][HTML] Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
[HTML][HTML] Automated methods for cell type annotation on scRNA-seq data
G Pasquini, JER Arias, P Schäfer… - Computational and …, 2021 - Elsevier
The advent of single-cell sequencing started a new era of transcriptomic and genomic
research, advancing our knowledge of the cellular heterogeneity and dynamics. Cell type …
research, advancing our knowledge of the cellular heterogeneity and dynamics. Cell type …
[HTML][HTML] Functional, metabolic and transcriptional maturation of human pancreatic islets derived from stem cells
Transplantation of pancreatic islet cells derived from human pluripotent stem cells is a
promising treatment for diabetes. Despite progress in the generation of stem-cell-derived …
promising treatment for diabetes. Despite progress in the generation of stem-cell-derived …
[HTML][HTML] Mitochondrial DNA mutations drive aerobic glycolysis to enhance checkpoint blockade response in melanoma
M Mahmood, EM Liu, AL Shergold, E Tolla… - Nature cancer, 2024 - nature.com
The mitochondrial genome (mtDNA) encodes essential machinery for oxidative
phosphorylation and metabolic homeostasis. Tumor mtDNA is among the most somatically …
phosphorylation and metabolic homeostasis. Tumor mtDNA is among the most somatically …
[HTML][HTML] SARS-CoV-2 promotes microglial synapse elimination in human brain organoids
n Samudyata, AO Oliveira, S Malwade… - Molecular …, 2022 - nature.com
Neuropsychiatric manifestations are common in both the acute and post-acute phase of
SARS-CoV-2 infection, but the mechanisms of these effects are unknown. In a newly …
SARS-CoV-2 infection, but the mechanisms of these effects are unknown. In a newly …
[HTML][HTML] Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq
M Philpott, J Watson, A Thakurta, T Brown Jr… - Nature …, 2021 - nature.com
Here we describe single-cell corrected long-read sequencing (scCOLOR-seq), which
enables error correction of barcode and unique molecular identifier oligonucleotide …
enables error correction of barcode and unique molecular identifier oligonucleotide …
A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
S Pei, IT Shelton, AE Gillen, BM Stevens, M Gasparetto… - Cancer discovery, 2023 - AACR
The BCL2 inhibitor venetoclax has recently emerged as an important component of acute
myeloid leukemia (AML) therapy. Notably, use of this agent has revealed a previously …
myeloid leukemia (AML) therapy. Notably, use of this agent has revealed a previously …
[HTML][HTML] Neurological manifestations of COVID-19 feature T cell exhaustion and dedifferentiated monocytes in cerebrospinal fluid
M Heming, X Li, S Räuber, AK Mausberg, AL Boersch… - Immunity, 2021 - cell.com
Patients suffering from Coronavirus disease 2019 (COVID-19) can develop neurological
sequelae, such as headache and neuroinflammatory or cerebrovascular disease. These …
sequelae, such as headache and neuroinflammatory or cerebrovascular disease. These …
Pioneer factor ASCL1 cooperates with the mSWI/SNF complex at distal regulatory elements to regulate human neural differentiation
O Păun, YX Tan, H Patel, S Strohbuecker… - Genes & …, 2023 - genesdev.cshlp.org
Pioneer transcription factors are thought to play pivotal roles in developmental processes by
binding nucleosomal DNA to activate gene expression, though mechanisms through which …
binding nucleosomal DNA to activate gene expression, though mechanisms through which …
[HTML][HTML] Single-cell and single-nuclei RNA sequencing as powerful tools to decipher cellular heterogeneity and dysregulation in neurodegenerative diseases
R Cuevas-Diaz Duran, JC González-Orozco… - Frontiers in Cell and …, 2022 - frontiersin.org
Neurodegenerative diseases affect millions of people worldwide and there are currently no
cures. Two types of common neurodegenerative diseases are Alzheimer's (AD) and …
cures. Two types of common neurodegenerative diseases are Alzheimer's (AD) and …