Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
[HTML][HTML] Automated methods for cell type annotation on scRNA-seq data
G Pasquini, JER Arias, P Schäfer… - Computational and …, 2021 - Elsevier
The advent of single-cell sequencing started a new era of transcriptomic and genomic
research, advancing our knowledge of the cellular heterogeneity and dynamics. Cell type …
research, advancing our knowledge of the cellular heterogeneity and dynamics. Cell type …
Functional, metabolic and transcriptional maturation of human pancreatic islets derived from stem cells
Transplantation of pancreatic islet cells derived from human pluripotent stem cells is a
promising treatment for diabetes. Despite progress in the generation of stem-cell-derived …
promising treatment for diabetes. Despite progress in the generation of stem-cell-derived …
Mitochondrial DNA mutations drive aerobic glycolysis to enhance checkpoint blockade response in melanoma
M Mahmood, EM Liu, AL Shergold, E Tolla… - Nature cancer, 2024 - nature.com
The mitochondrial genome (mtDNA) encodes essential machinery for oxidative
phosphorylation and metabolic homeostasis. Tumor mtDNA is among the most somatically …
phosphorylation and metabolic homeostasis. Tumor mtDNA is among the most somatically …
SARS-CoV-2 promotes microglial synapse elimination in human brain organoids
n Samudyata, AO Oliveira, S Malwade… - Molecular …, 2022 - nature.com
Neuropsychiatric manifestations are common in both the acute and post-acute phase of
SARS-CoV-2 infection, but the mechanisms of these effects are unknown. In a newly …
SARS-CoV-2 infection, but the mechanisms of these effects are unknown. In a newly …
Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq
M Philpott, J Watson, A Thakurta, T Brown Jr… - Nature …, 2021 - nature.com
Here we describe single-cell corrected long-read sequencing (scCOLOR-seq), which
enables error correction of barcode and unique molecular identifier oligonucleotide …
enables error correction of barcode and unique molecular identifier oligonucleotide …
A novel type of monocytic leukemia stem cell revealed by the clinical use of venetoclax-based therapy
S Pei, IT Shelton, AE Gillen, BM Stevens, M Gasparetto… - Cancer discovery, 2023 - AACR
The BCL2 inhibitor venetoclax has recently emerged as an important component of acute
myeloid leukemia (AML) therapy. Notably, use of this agent has revealed a previously …
myeloid leukemia (AML) therapy. Notably, use of this agent has revealed a previously …
Neurological manifestations of COVID-19 feature T cell exhaustion and dedifferentiated monocytes in cerebrospinal fluid
M Heming, X Li, S Räuber, AK Mausberg, AL Boersch… - Immunity, 2021 - cell.com
Patients suffering from Coronavirus disease 2019 (COVID-19) can develop neurological
sequelae, such as headache and neuroinflammatory or cerebrovascular disease. These …
sequelae, such as headache and neuroinflammatory or cerebrovascular disease. These …
Pioneer factor ASCL1 cooperates with the mSWI/SNF complex at distal regulatory elements to regulate human neural differentiation
Pioneer transcription factors are thought to play pivotal roles in developmental processes by
binding nucleosomal DNA to activate gene expression, though mechanisms through which …
binding nucleosomal DNA to activate gene expression, though mechanisms through which …
Single-cell and single-nuclei RNA sequencing as powerful tools to decipher cellular heterogeneity and dysregulation in neurodegenerative diseases
R Cuevas-Diaz Duran, JC González-Orozco… - Frontiers in Cell and …, 2022 - frontiersin.org
Neurodegenerative diseases affect millions of people worldwide and there are currently no
cures. Two types of common neurodegenerative diseases are Alzheimer's (AD) and …
cures. Two types of common neurodegenerative diseases are Alzheimer's (AD) and …