Isobaric labeling-based relative quantification in shotgun proteomics

N Rauniyar, JR Yates III - Journal of proteome research, 2014 - ACS Publications
Mass spectrometry plays a key role in relative quantitative comparisons of proteins in order
to understand their functional role in biological systems upon perturbation. In this review, we …

Ferroptosis in inflammatory arthritis: a promising future

S Chang, M Tang, B Zhang, D Xiang, F Li - Frontiers in Immunology, 2022 - frontiersin.org
Ferroptosis is a kind of regulatory cell death (RCD) caused by iron accumulation and lipid
peroxidation, which is characterized by mitochondrial morphological changes and has a …

KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands

AM Farcas, NP Blackledge, I Sudbery, HK Long… - elife, 2012 - elifesciences.org
CpG islands (CGIs) are associated with most mammalian gene promoters. A subset of CGIs
act as polycomb response elements (PREs) and are recognized by the polycomb silencing …

Analysis of the plasma proteome using iTRAQ and TMT‐based Isobaric labeling

R Moulder, SD Bhosale, DR Goodlett… - Mass spectrometry …, 2018 - Wiley Online Library
Over the past decade, chemical labeling with isobaric tandem mass tags, such as isobaric
tags for relative and absolute quantification reagents (iTRAQ) and tandem mass tag (TMT) …

SPATA2 links CYLD to LUBAC, activates CYLD, and controls LUBAC signaling

PR Elliott, D Leske, M Hrdinka, K Bagola, BK Fiil… - Molecular cell, 2016 - cell.com
The linear ubiquitin chain assembly complex (LUBAC) regulates immune signaling, and its
function is regulated by the deubiquitinases OTULIN and CYLD, which associate with the …

Cell metabolomics

A Zhang, H Sun, H Xu, S Qiu, X Wang - Omics: a journal of …, 2013 - liebertpub.com
Metabolomics technologies enable the examination and identification of endogenous
biochemical reaction products, revealing information on the precise metabolic pathways and …

Metabolomics in rheumatic diseases: desperately seeking biomarkers

M Guma, S Tiziani, GS Firestein - Nature Reviews Rheumatology, 2016 - nature.com
Metabolomics enables the profiling of large numbers of small molecules in cells, tissues and
biological fluids. These molecules, which include amino acids, carbohydrates, lipids …

Identification and validation of urinary metabolite biomarkers for major depressive disorder

P Zheng, Y Wang, L Chen, D Yang, H Meng… - Molecular & Cellular …, 2013 - ASBMB
Major depressive disorder (MDD) is a widespread and debilitating mental disorder.
However, there are no biomarkers available to aid in the diagnosis of this disorder. In this …

TEX264 coordinates p97-and SPRTN-mediated resolution of topoisomerase 1-DNA adducts

J Fielden, K Wiseman, I Torrecilla, S Li, S Hume… - Nature …, 2020 - nature.com
Abstract Eukaryotic topoisomerase 1 (TOP1) regulates DNA topology to ensure efficient
DNA replication and transcription. TOP1 is also a major driver of endogenous genome …

Arginine methylation controls growth regulation by E2F‐1

EC Cho, S Zheng, S Munro, G Liu, SM Carr… - The EMBO …, 2012 - embopress.org
E2F transcription factors are implicated in diverse cellular functions. The founding member,
E2F‐1, is endowed with contradictory activities, being able to promote cell‐cycle …