Tracing the footsteps of autophagy in computational biology

DT Sarmah, N Bairagi, S Chatterjee - Briefings in Bioinformatics, 2021 - academic.oup.com
Autophagy plays a crucial role in maintaining cellular homeostasis through the degradation
of unwanted materials like damaged mitochondria and misfolded proteins. However, the …

Latent tuberculosis and computational biology: A less-talked affair

DT Sarmah, R Parveen, J Kundu… - Progress in Biophysics and …, 2023 - Elsevier
Tuberculosis (TB) is a pervasive and devastating air-borne disease caused by the
organisms belonging to the Mycobacterium tuberculosis (Mtb) complex. Currently, it is the …

[图书][B] Big Data Analytics in Chemoinformatics and Bioinformatics: With Applications to Computer-Aided Drug Design, Cancer Biology, Emerging Pathogens and …

SC Basak, M Vračko - 2022 - books.google.com
Big Data Analytics in Chemoinformatics and Bioinformatics: With Applications to Computer-
Aided Drug Design, Cancer Biology, Emerging Pathogens and Computational Toxicology …

konnect2prot: a web application to explore the protein properties in a functional protein–protein interaction network

S Kumar, DT Sarmah, S Asthana, S Chatterjee - Bioinformatics, 2023 - academic.oup.com
Motivation The regulation of proteins governs the biological processes and functions and,
therefore, the organisms' phenotype. So there is an unmet need for a systematic tool for …

A data-driven multilayer approach for the identification of potential therapeutic targets in non-alcoholic steatohepatitis

DT Sarmah, A Paul, S Kumar, N Bairagi… - Physica A: Statistical …, 2023 - Elsevier
The traditional computational methods of investigating a disease system are limited by the
inability to look at the in-depth association between different molecular layers. For instance …

Bidirectional regulation between AP-1 and SUMOylation pathway genes modulates inflammatory signaling during Salmonella infection

P Kumar, A Soory, SA Mustfa… - Journal of Cell …, 2022 - journals.biologists.com
ABSTRACT Post-translational modifications (PTMs), such as SUMOylation, are known to
modulate fundamental processes of a cell. Infectious agents such as Salmonella …

BAG6 is a novel player in controlling nonalcoholic steatohepatitis: result from a comprehensive in-silico study

DT Sarmah, A Paul, U Berry, M Surjit, N Bairagi… - bioRxiv, 2023 - biorxiv.org
Nonalcoholic steatohepatitis, or NASH, is a multifactorial disease characterized by hepatic
lipid accumulation, inflammation, cell death, and fibrosis, and an efficacious pharmaceutical …

Extracting predictors for lung adenocarcinoma based on Granger causality test and stepwise character selection

X Fan, Y Wang, XQ Tang - BMC bioinformatics, 2019 - Springer
Background Lung adenocarcinoma is the most common type of lung cancer, with high
mortality worldwide. Its occurrence and development were thoroughly studied by high …

Recent advances in drug development targeting cancer metabolism

N Sugandha, L Mittal, A Awasthi, S Asthana - Cancer Cell Metabolism: A …, 2020 - Springer
Cancer cell proliferation and their adaptation to tough environments depend critically on
metabolic pathways. The pathological, phenotypic, and structural level understanding of …

Bidirectional regulation between AP-1 and SUMO genes modulates inflammatory signalling during Salmonella Typhimurium infection

P Kumar, A Soory, SA Mustfa, DT Sarmah, S Chatterjee… - bioRxiv, 2022 - biorxiv.org
Abstract Gram-negative bacterium Salmonella Typhimurium (STm) is the causative agent of
gastroenteritis. Among the various gut pathogens, STm is still one of the most frequent …