Gut microbiota parallelism and divergence associated with colonisation of novel habitats

A Härer, AA Mauro, TG Laurentino… - Molecular …, 2023 - Wiley Online Library
An organism's gut microbiota can change in response to novel environmental conditions, in
particular when colonisation of new habitats is accompanied by shifts in the host species' …

The Role of Host-Associated Factors on Metazoan Microbiome Assembly

AW Brooks - 2019 - search.proquest.com
Gut microbiomes, the genetic repertoire for millions to trillions of microbes residing
throughout each metazoan's digestive tract, are shaped by their host and environment …

Application of ecological and evolutionary theory to microbiome community dynamics across systems

JE McDonald, JR Marchesi… - Proceedings of the …, 2020 - royalsocietypublishing.org
A fundamental aim of microbiome research is to understand the factors that influence the
assembly and stability of host-associated microbiomes, and their impact on host phenotype …

Making a microbiome: the many determinants of host-associated microbial community composition

KL Adair, AE Douglas - Current opinion in microbiology, 2017 - Elsevier
Highlights•The microbiomes in many animal and plant hosts are diverse and
variable.•Within-host processes are dominated by host-microbe and among-microbe …

Cross-kingdom similarities in microbiome functions

R Mendes, JM Raaijmakers - The ISME journal, 2015 - academic.oup.com
Recent advances in medical research have revealed how humans rely on their microbiome
for diverse traits and functions. Similarly, microbiomes of other higher organisms play key …

[图书][B] Characterizing the fitness landscapes of gut symbionts in defined community and diet contexts

M Wu - 2014 - search.proquest.com
A species' niche is the description of all the environmental conditions required to permit a
population of that species to persist, including the effects of the population on those …

Drivers of microbiome biodiversity: a review of general rules, feces, and ignorance

AT Reese, RR Dunn - MBio, 2018 - Am Soc Microbiol
The alpha diversity of ecologic communities is affected by many biotic and abiotic drivers
and, in turn, affects ecosystem functioning. Yet, patterns of alpha diversity in host-associated …

From microbiome composition to functional engineering, one step at a time

SD Burz, S Causevic, A Dal Co… - Microbiology and …, 2023 - Am Soc Microbiol
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …

Deciphering microbial interactions in synthetic human gut microbiome communities

OS Venturelli, AV Carr, G Fisher, RH Hsu… - Molecular systems …, 2018 - embopress.org
The ecological forces that govern the assembly and stability of the human gut microbiota
remain unresolved. We developed a generalizable model‐guided framework to predict …

Exploring the application of ecological theory to the human gut microbiota using complex defined microbial communities as models

K Oliphant - 2018 - atrium.lib.uoguelph.ca
The ecosystem of microorganisms that inhabit the human gastrointestinal tract, termed the
gut microbiota, critically maintains host homeostasis. Alterations in species structure and …