Stochastic models inspired by hybridization theory for short oligonucleotide arrays
Z Wu, RA Irizarry - Proceedings of the eighth annual international …, 2004 - dl.acm.org
High density oligonucleotide expression arrays are a widely used tool for the measurement
of gene expression on a large scale. Affymetrix GeneChip arrays appear to dominate this …
of gene expression on a large scale. Affymetrix GeneChip arrays appear to dominate this …
A model-based background adjustment for oligonucleotide expression arrays
Z Wu, RA Irizarry, R Gentleman… - Journal of the …, 2004 - Taylor & Francis
High-density oligonucleotide expression arrays are widely used in many areas of
biomedical research. Affymetrix GeneChip arrays are the most popular. In the Affymetrix …
biomedical research. Affymetrix GeneChip arrays are the most popular. In the Affymetrix …
Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model
R Šášik, E Calvo, J Corbeil - Bioinformatics, 2002 - academic.oup.com
Motivation: High-density oligonucleotide arrays (GeneChip, Affymetrix, Santa Clara, CA)
have become a standard research tool in many areas of biomedical research. They …
have become a standard research tool in many areas of biomedical research. They …
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
Recent advances in cDNA and oligonucleotide DNA arrays have made it possible to
measure the abundance of mRNA transcripts for many genes simultaneously. The analysis …
measure the abundance of mRNA transcripts for many genes simultaneously. The analysis …
Summaries of Affymetrix GeneChip probe level data
High density oligonucleotide array technology is widely used in many areas of biomedical
research for quantitative and highly parallel measurements of gene expression. Affymetrix …
research for quantitative and highly parallel measurements of gene expression. Affymetrix …
Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays
Motivation: Oligonucleotide expression arrays exhibit systematic and reproducible variation
produced by the multiple distinct probes used to represent a gene. Recently, a gene …
produced by the multiple distinct probes used to represent a gene. Recently, a gene …
Probe selection for high-density oligonucleotide arrays
R Mei, E Hubbell, S Bekiranov… - Proceedings of the …, 2003 - National Acad Sciences
High-density oligonucleotide microarrays enable simultaneous monitoring of expression
levels of tens of thousands of transcripts. For accurate detection and quantitation of …
levels of tens of thousands of transcripts. For accurate detection and quantitation of …
A systematic statistical linear modeling approach to oligonucleotide array experiments
TM Chu, B Weir, R Wolfinger - Mathematical biosciences, 2002 - Elsevier
We outline and describe steps for a statistically rigorous approach to analyzing probe-level
Affymetrix GeneChip data. The approach employs classical linear mixed models and …
Affymetrix GeneChip data. The approach employs classical linear mixed models and …
[HTML][HTML] Exon arrays provide accurate assessments of gene expression
We have developed a strategy for estimating gene expression on Affymetrix Exon arrays.
The method includes a probe-specific background correction and a probe selection strategy …
The method includes a probe-specific background correction and a probe selection strategy …
Absolute mRNA concentrations from sequence‐specific calibration of oligonucleotide arrays
Oligonucleotide microarrays are based on the hybridization of labeled mRNA molecules to
short length oligonucleotide probes on a glass surface. Two effects have been shown to …
short length oligonucleotide probes on a glass surface. Two effects have been shown to …