Origins of major archaeal clades do not correspond to gene acquisitions from bacteria

M Groussin, B Boussau, G Szöllősi, L Eme, M Gouy… - bioRxiv, 2015 - biorxiv.org
In a recent articxle, Nelson-Sathi et al.[NS] report that the origins of Major Archaeal Lineages
[MAL] correspond to massive group-specific gene acquisitions via horizontal gene transfer …

Gene acquisitions from bacteria at the origins of major archaeal clades are vastly overestimated

M Groussin, B Boussau, G Szöllõsi… - Molecular Biology …, 2016 - academic.oup.com
In a recent article, Nelson-Sathi et al.(NS) report that the origins of major archaeal lineages
(MAL) correspond to massive group-specific gene acquisitions via HGT from bacteria …

Origins of major archaeal clades correspond to gene acquisitions from bacteria

S Nelson-Sathi, FL Sousa, M Roettger… - Nature, 2015 - nature.com
The mechanisms that underlie the origin of major prokaryotic groups are poorly understood.
In principle, the origin of both species and higher taxa among prokaryotes should entail …

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

YI Wolf, KS Makarova, N Yutin, EV Koonin - Biology direct, 2012 - Springer
Abstract Background Collections of Clusters of Orthologous Genes (COGs) provide
indispensable tools for comparative genomic analysis, evolutionary reconstruction and …

Low rates of lateral gene transfer among metabolic genes define the evolving biogeochemical niches of archaea through deep time

CE Blank - Archaea, 2012 - Wiley Online Library
Phylogenomic analyses of archaeal genome sequences are providing windows into the
group's evolutionary past, even though most archaeal taxa lack a conventional fossil record …

Deeply tangled evolution

E Jones - Nature Ecology & Evolution, 2022 - nature.com
Horizontal gene transfer has played an important role in shaping the evolution of bacteria,
archaea and eukaryotes, but also obscures the deep evolutionary relationships in and …

Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

R Méheust, AK Watson, FJ Lapointe, RT Papke… - Genome Biology, 2018 - Springer
Background Haloarchaea, a major group of archaea, are able to metabolize sugars and to
live in oxygenated salty environments. Their physiology and lifestyle strongly contrast with …

An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences

C Brochier, P Forterre, S Gribaldo - BMC evolutionary biology, 2005 - Springer
Background The concept of a genomic core, defined as the set of genes ubiquitous in all
genomes of a monophyletic group, has become crucial in comparative and evolutionary …

The new foundations of evolution: on the tree of life

JO Andersson - 2011 - academic.oup.com
I believe that few people would argue against that lateral gene transfer is a fundamental
process in the evolution of Bacteria and Archaea and that an understanding of this …

Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis

WA Akanni, K Siu-Ting, CJ Creevey… - … of the Royal …, 2015 - royalsocietypublishing.org
The origin of the eukaryotic cell is considered one of the major evolutionary transitions in the
history of life. Current evidence strongly supports a scenario of eukaryotic origin in which two …