[HTML][HTML] Insights from characterizing extinct human gut microbiomes

RY Tito, D Knights, J Metcalf, AJ Obregon-Tito… - PloS one, 2012 - journals.plos.org
In an effort to better understand the ancestral state of the human distal gut microbiome, we
examine feces retrieved from archaeological contexts (coprolites). To accomplish this, we …

[HTML][HTML] Phylotyping and functional analysis of two ancient human microbiomes

RY Tito, S Macmil, G Wiley, F Najar, L Cleeland, C Qu… - PLoS …, 2008 - journals.plos.org
Background The Human Microbiome Project (HMP) is one of the US National Institutes of
Health Roadmap for Medical Research. Primary interests of the HMP include the …

[HTML][HTML] Paleomicrobiology: revealing fecal microbiomes of ancient indigenous cultures

RJ Cano, J Rivera-Perez, GA Toranzos… - PloS one, 2014 - journals.plos.org
Coprolites are fossilized feces that can be used to provide information on the composition of
the intestinal microbiota and, as we show, possibly on diet. We analyzed human coprolites …

[HTML][HTML] Reconstruction of ancient microbial genomes from the human gut

MC Wibowo, Z Yang, M Borry, A Hübner, KD Huang… - Nature, 2021 - nature.com
Loss of gut microbial diversity,,,,–in industrial populations is associated with chronic
diseases, underscoring the importance of studying our ancestral gut microbiome. However …

[HTML][HTML] Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt

S Rampelli, S Turroni, C Mallol, C Hernandez… - Communications …, 2021 - nature.com
A comprehensive view of our evolutionary history cannot ignore the ancestral features of our
gut microbiota. To provide some glimpse into the past, we searched for human gut …

[HTML][HTML] Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities

S Yildirim, CJ Yeoman, M Sipos, M Torralba… - PloS one, 2010 - journals.plos.org
Background Host-associated microbes comprise an integral part of animal digestive systems
and these interactions have a long evolutionary history. It has been hypothesized that the …

[HTML][HTML] Gut Microbiome of an 11th Century AD Pre-Columbian Andean Mummy

TM Santiago-Rodriguez, G Fornaciari, S Luciani… - PloS one, 2015 - journals.plos.org
The process of natural mummification is a rare and unique process from which little is known
about the resulting microbial community structure. In the present study, we characterized the …

[HTML][HTML] Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification

KA Ziesemer, AE Mann, K Sankaranarayanan… - Scientific reports, 2015 - nature.com
To date, characterization of ancient oral (dental calculus) and gut (coprolite) microbiota has
been primarily accomplished through a metataxonomic approach involving targeted …

[HTML][HTML] Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny

KR Amato, EK Mallott, D McDonald, NJ Dominy… - Genome biology, 2019 - Springer
Background Comparative data from non-human primates provide insight into the processes
that shaped the evolution of the human gut microbiome and highlight microbiome traits that …

[HTML][HTML] Subsistence strategies in traditional societies distinguish gut microbiomes

AJ Obregon-Tito, RY Tito, J Metcalf… - Nature …, 2015 - nature.com
Recent studies suggest that gut microbiomes of urban-industrialized societies are different
from those of traditional peoples. Here we examine the relationship between lifeways and …