Genome-wide survey and analysis of microsatellite sequences in bovid species

WH Qi, XM Jiang, LM Du, GS Xiao, TZ Hu, BS Yue… - PLoS …, 2015 - journals.plos.org
Microsatellites or simple sequence repeats (SSRs) have become the most popular source of
genetic markers, which are ubiquitously distributed in many eukaryotic and prokaryotic …

Distribution patterns and variation analysis of simple sequence repeats in different genomic regions of bovid genomes

WH Qi, XM Jiang, CC Yan, WQ Zhang, GS Xiao… - Scientific reports, 2018 - nature.com
As the first examination of distribution, guanine-cytosine (GC) pattern, and variation analysis
of microsatellites (SSRs) in different genomic regions of six bovid species, SSRs displayed …

Genome-wide distribution and organization of microsatellites in six species of birds

J Huang, WJ Li, ZY Jian, BS Yue, YF Yan - Biochemical systematics and …, 2016 - Elsevier
Simple sequence repeats (SSRs), or microsatellites, are important genetic markers and play
a significant role in genome organization. The genome-wide analyses of microsatellite …

Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes

FJ Ruiz-Ruano, Á Cuadrado, EE Montiel… - Chromosoma, 2015 - Springer
Simple sequence repeats (SSRs), also known as microsatellites, are one of the prominent
DNA sequences shaping the repeated fraction of eukaryotic genomes. In spite of their …

Genome-wide mining of microsatellites in king cobra (Ophiophagus hannah) and cross-species development of tetranucleotide SSR markers in Chinese cobra (Naja …

W Liu, Y Xu, Z Li, J Fan, Y Yang - Molecular biology reports, 2019 - Springer
The complete genome sequence provides the opportunity for genome-wide and coding
region analysis of SSRs in the king cobra and for cross-species identification of …

Genome-wide characterization and analysis of microsatellite sequences in camelid species

MM Manee, AT Algarni, SN Alharbi, BM Al-Shomrani… - Mammal research, 2020 - Springer
Microsatellites or simple sequence repeats (SSRs) are among the genetic markers most
widely utilized in research. This includes applications in numerous fields such as genetic …

Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake

TA Castoe, AW Poole, APJ De Koning, KL Jones… - PloS one, 2012 - journals.plos.org
Identification of microsatellites, or simple sequence repeats (SSRs), can be a time-
consuming and costly investment requiring enrichment, cloning, and sequencing of …

Analyses of carnivore microsatellites and their intimate association with tRNA-derived SINEs

F López-Giráldez, O Andrés, X Domingo-Roura… - BMC genomics, 2006 - Springer
Background The popularity of microsatellites has greatly increased in the last decade on
account of their many applications. However, little is currently understood about the factors …

Low frequency of microsatellites in the avian genome

CR Primmer, T Raudsepp, BP Chowdhary… - Genome …, 1997 - genome.cshlp.org
A better insight into the occurrence of microsatellites in a range of taxa may help to
understand the evolution of simple repeats. Previous studies have found the relative …

Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

J Abdelkrim, BC Robertson, JAL Stanton… - …, 2009 - Future Science
Microsatellites are the genetic markers of choice for many population genetic studies, but
must be isolated de novo using recombinant approaches where prior genetic data are …