The pitfalls of proteomics experiments without the correct use of bioinformatics tools

DG Biron, C Brun, T Lefevre, C Lebarbenchon… - …, 2006 - Wiley Online Library
The elucidation of the entire genomic sequence of various organisms, from viruses to
complex metazoans, most recently man, is undoubtedly the greatest triumph of molecular …

Interaction proteomics

M Monti, S Orru, D Pagnozzi, P Pucci - Bioscience reports, 2005 - Springer
The term proteome is traditionally associated with the identification of a large number of
proteins within complex mixtures originating from a given organelle, cell or even organism …

Protein–protein interaction maps: a lead towards cellular functions

P Legrain, J Wojcik, JM Gauthier - Trends in genetics, 2001 - cell.com
The availability of complete genome sequences now permits the development of tools for
functional biology on a proteomic scale. Several experimental approaches or in silico …

The post‐genomic era of interactive proteomics: Facts and perspectives

D Auerbach, S Thaminy, MO Hottiger, I Stagljar - Proteomics, 2002 - Wiley Online Library
The availability of completed genome sequences of several eukaryotic and prokaryotic
species has shifted the focus towards the identification and characterization of all gene …

From classical to new generation approaches: An excursus of-omics methods for investigation of protein-protein interaction networks

I Iacobucci, V Monaco, F Cozzolino, M Monti - Journal of proteomics, 2021 - Elsevier
Functional Proteomics aims to the identification of in vivo protein-protein interaction (PPI) in
order to piece together protein complexes, and therefore, cell pathways involved in …

Integrating a functional proteomic approach into the target discovery process

F Colland, L Daviet - Biochimie, 2004 - Elsevier
Functional proteomics is a promising technique for the rational identification of novel
therapeutic targets by elucidation of the function of newly identified proteins in disease …

Identifying novel protein interactions: Proteomic methods, optimisation approaches and data analysis pipelines

DG Carneiro, T Clarke, CC Davies, D Bailey - Methods, 2016 - Elsevier
The technological revolution in high-throughput nucleic acid and protein analysis in the last
15 years has launched the field of 'omics' and led to great advances in our understanding of …

Twenty years of protein interaction studies for biological function deciphering

P Legrain, JC Rain - Journal of proteomics, 2014 - Elsevier
Intensive methodological developments and technology innovation have been devoted to
protein–protein interaction studies over 20 years. Genetic indirect assays and sophisticated …

[HTML][HTML] Categorizing biases in high-confidence high-throughput protein-protein interaction data sets

X Yu, J Ivanic, V Memišević, A Wallqvist… - Molecular & Cellular …, 2011 - ASBMB
We characterized and evaluated the functional attributes of three yeast high-confidence
protein-protein interaction data sets derived from affinity purification/mass spectrometry …

Bioinformatics challenges in proteomics

CC Englbrecht, A Facius - Combinatorial chemistry & high …, 2005 - ingentaconnect.com
A little after the genomic revolution had been celebrated, it seemed as if a competition
began to found new-omics disciplines that ultimately all have the same goal, the …