[HTML][HTML] In vivo continuous evolution of genes and pathways in yeast

N Crook, J Abatemarco, J Sun, JM Wagner… - Nature …, 2016 - nature.com
Directed evolution remains a powerful, highly generalizable approach for improving the
performance of biological systems. However, implementations in eukaryotes rely either on in …

Synthetic biology of yeast

Z Liu, Y Zhang, J Nielsen - Biochemistry, 2019 - ACS Publications
With the rapid development of DNA synthesis and next-generation sequencing, synthetic
biology that aims to standardize, modularize, and innovate cellular functions, has achieved …

Yeast evolutionary genomics

B Dujon - Nature Reviews Genetics, 2010 - nature.com
Over the past few years, genome sequences have become available from an increasing
range of yeast species, which has led to notable advances in our understanding of …

Saccharomyces cerevisiae in directed evolution: an efficient tool to improve enzymes

D Gonzalez-Perez, E Garcia-Ruiz, M Alcalde - Bioengineered, 2012 - Taylor & Francis
Over the past 20 years, directed evolution has been seen to be the most reliable approach to
protein engineering. Emulating the natural selection algorithm, ad hoc enzymes with novel …

A Multiplex MoClo Toolkit for Extensive and Flexible Engineering of Saccharomyces cerevisiae

WM Shaw, AS Khalil, T Ellis - ACS Synthetic Biology, 2023 - ACS Publications
Synthetic biology toolkits are one of the core foundations on which the field has been built,
facilitating and accelerating efforts to reprogram cells and organisms for diverse …

A highly characterized yeast toolkit for modular, multipart assembly

ME Lee, WC DeLoache, B Cervantes… - ACS synthetic …, 2015 - ACS Publications
Saccharomyces cerevisiae is an increasingly attractive host for synthetic biology because of
its long history in industrial fermentations. However, until recently, most synthetic biology …

The promise of functional genomics: completing the encyclopedia of a cell

TR Hughes, MD Robinson, N Mitsakakis… - Current opinion in …, 2004 - Elsevier
Genome sequencing provides complete parts lists of organisms. This presents the obvious
challenge of determining how each gene contributes to the life of the organism. This task …

Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER

BG Wong, CP Mancuso, S Kiriakov, CJ Bashor… - Nature …, 2018 - nature.com
Precise control over microbial cell growth conditions could enable detection of minute
phenotypic changes, which would improve our understanding of how genotypes are shaped …

A genome‐scale yeast library with inducible expression of individual genes

Y Arita, G Kim, Z Li, H Friesen, G Turco… - Molecular Systems …, 2021 - embopress.org
The ability to switch a gene from off to on and monitor dynamic changes provides a powerful
approach for probing gene function and elucidating causal regulatory relationships. Here …

[HTML][HTML] De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

N Vakirlis, O Acar, B Hsu, N Castilho Coelho… - Nature …, 2020 - nature.com
Recent evidence demonstrates that novel protein-coding genes can arise de novo from non-
genic loci. This evolutionary innovation is thought to be facilitated by the pervasive …