Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

ASE Cuomo, DD Seaton, DJ McCarthy… - Nature …, 2020 - nature.com
Recent developments in stem cell biology have enabled the study of cell fate decisions in
early human development that are impossible to study in vivo. However, understanding how …

Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm

LF Chu, N Leng, J Zhang, Z Hou, D Mamott… - Genome biology, 2016 - Springer
Background Human pluripotent stem cells offer the best available model to study the
underlying cellular and molecular mechanisms of human embryonic lineage specification …

[PDF][PDF] Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast

GG Stirparo, T Boroviak, G Guo, J Nichols… - …, 2018 - journals.biologists.com
Single-cell profiling techniques create opportunities to delineate cell fate progression in
mammalian development. Recent studies have provided transcriptome data from human pre …

[HTML][HTML] A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity

NY Chia, YS Chan, B Feng, X Lu, YL Orlov, D Moreau… - Nature, 2010 - nature.com
The derivation of human ES cells (hESCs) from human blastocysts represents one of the
milestones in stem cell biology. The full potential of hESCs in research and clinical …

Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation

P Madrigal, S Deng, Y Feng, S Militi, KJ Goh… - Nature …, 2023 - nature.com
Stem cells undergo cellular division during their differentiation to produce daughter cells
with a new cellular identity. However, the epigenetic events and molecular mechanisms …

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

F Tang, C Barbacioru, S Bao, C Lee, E Nordman… - Cell stem cell, 2010 - cell.com
During the transition from the inner cell mass (ICM) cells of blastocysts to pluripotent
embryonic stem cells (ESCs) in vitro, a normal developmental program is replaced in cells …

Transcription factor binding dynamics during human ES cell differentiation

AM Tsankov, H Gu, V Akopian, MJ Ziller, J Donaghey… - Nature, 2015 - nature.com
Pluripotent stem cells provide a powerful system to dissect the underlying molecular
dynamics that regulate cell fate changes during mammalian development. Here we report …

Unraveling epigenetic regulation in embryonic stem cells

M Bibikova, LC Laurent, B Ren, JF Loring, JB Fan - Cell stem cell, 2008 - cell.com
Embryonic stem (ES) cells can replicate indefinitely while retaining the capacity to
differentiate into functionally distinct cell types. ES cells proliferate and differentiate without …

Global transcription in pluripotent embryonic stem cells

S Efroni, R Duttagupta, J Cheng, H Dehghani… - Cell stem cell, 2008 - cell.com
The molecular mechanisms underlying pluripotency and lineage specification from
embryonic stem cells (ESCs) are largely unclear. Differentiation pathways may be …

[HTML][HTML] High-resolution analysis with novel cell-surface markers identifies routes to iPS cells

J O'Malley, S Skylaki, KA Iwabuchi, E Chantzoura… - Nature, 2013 - nature.com
The generation of induced pluripotent stem (iPS) cells presents a challenge to normal
developmental processes. The low efficiency and heterogeneity of most methods have …