Quantitative single-cell RNA-seq with unique molecular identifiers

S Islam, A Zeisel, S Joost, G La Manno, P Zajac… - Nature …, 2014 - nature.com
Single-cell RNA sequencing (RNA-seq) is a powerful tool to reveal cellular heterogeneity,
discover new cell types and characterize tumor microevolution. However, losses in cDNA …

Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins

J Gehring, J Hwee Park, S Chen, M Thomson… - Nature …, 2020 - nature.com
We describe a universal sample multiplexing method for single-cell RNA sequencing in
which fixed cells are chemically labeled by attaching identifying DNA oligonucleotides to …

Full-length RNA-seq from single cells using Smart-seq2

S Picelli, OR Faridani, ÅK Björklund, G Winberg… - Nature protocols, 2014 - nature.com
Emerging methods for the accurate quantification of gene expression in individual cells hold
promise for revealing the extent, function and origins of cell-to-cell variability. Different high …

Entering the era of single-cell transcriptomics in biology and medicine

R Sandberg - Nature methods, 2014 - nature.com
Recent technical advances have enabled RNA sequencing (RNA-seq) in single cells.
Exploratory studies have already led to insights into the dynamics of differentiation, cellular …

Single-cell RNA counting at allele and isoform resolution using Smart-seq3

M Hagemann-Jensen, C Ziegenhain, P Chen… - Nature …, 2020 - nature.com
Large-scale sequencing of RNA from individual cells can reveal patterns of gene, isoform
and allelic expression across cell types and states. However, current short-read single-cell …

Exponential scaling of single-cell RNA-seq in the past decade

V Svensson, R Vento-Tormo, SA Teichmann - Nature protocols, 2018 - nature.com
Measurement of the transcriptomes of single cells has been feasible for only a few years, but
it has become an extremely popular assay. While many types of analysis can be carried out …

Current and future methods for mRNA analysis: a drive toward single molecule sequencing

A Bayega, S Fahiminiya, S Oikonomopoulos… - … Analysis: Methods and …, 2018 - Springer
The transcriptome encompasses a range of species including messenger RNA, and other
noncoding RNA such as rRNA, tRNA, and short and long noncoding RNAs. Due to the huge …

Quantitative assessment of single-cell RNA-sequencing methods

AR Wu, NF Neff, T Kalisky, P Dalerba, B Treutlein… - Nature …, 2014 - nature.com
Interest in single-cell whole-transcriptome analysis is growing rapidly, especially for profiling
rare or heterogeneous populations of cells. We compared commercially available single-cell …

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

D Ramsköld, S Luo, YC Wang, R Li, Q Deng… - Nature …, 2012 - nature.com
Genome-wide transcriptome analyses are routinely used to monitor tissue-, disease-and cell
type–specific gene expression, but it has been technically challenging to generate …

Microfluidic single-cell whole-transcriptome sequencing

AM Streets, X Zhang, C Cao, Y Pang… - Proceedings of the …, 2014 - National Acad Sciences
Single-cell whole-transcriptome analysis is a powerful tool for quantifying gene expression
heterogeneity in populations of cells. Many techniques have, thus, been recently developed …