RNA velocity of single cells

G La Manno, R Soldatov, A Zeisel, E Braun… - Nature, 2018 - nature.com
RNA abundance is a powerful indicator of the state of individual cells. Single-cell RNA
sequencing can reveal RNA abundance with high quantitative accuracy, sensitivity and …

Direct RNA sequencing

F Ozsolak, AR Platt, DR Jones, JG Reifenberger… - Nature, 2009 - nature.com
Our understanding of human biology and disease is ultimately dependent on a complete
understanding of the genome and its functions. The recent application of microarray and …

[HTML][HTML] A single-cell time-lapse of mouse prenatal development from gastrula to birth

C Qiu, BK Martin, IC Welsh, RM Daza, TM Le, X Huang… - Nature, 2024 - nature.com
The house mouse (Mus musculus) is an exceptional model system, combining genetic
tractability with close evolutionary affinity to humans,. Mouse gestation lasts only 3 weeks …

[HTML][HTML] RNA profiles reveal signatures of future health and disease in pregnancy

M Rasmussen, M Reddy, R Nolan, J Camunas-Soler… - Nature, 2022 - nature.com
Maternal morbidity and mortality continue to rise, and pre-eclampsia is a major driver of this
burden. Yet the ability to assess underlying pathophysiology before clinical presentation to …

Generalizing RNA velocity to transient cell states through dynamical modeling

V Bergen, M Lange, S Peidli, FA Wolf, FJ Theis - Nature biotechnology, 2020 - nature.com
RNA velocity has opened up new ways of studying cellular differentiation in single-cell RNA-
sequencing data. It describes the rate of gene expression change for an individual gene at a …

[HTML][HTML] RNA velocity: molecular kinetics from single-cell RNA-Seq

V Svensson, L Pachter - Molecular cell, 2018 - cell.com
RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq: Molecular Cell Skip to Main
Content Skip to Main Menu Advertisement Molecular Cell This journal offers authors two …

Single-molecule imaging of transcription dynamics in somatic stem cells

JC Wheat, Y Sella, M Willcockson, AI Skoultchi… - Nature, 2020 - nature.com
Molecular noise is a natural phenomenon that is inherent to all biological systems,. How
stochastic processes give rise to the robust outcomes that support tissue homeostasis …

[HTML][HTML] Measuring absolute RNA copy numbers at high temporal resolution reveals transcriptome kinetics in development

NDL Owens, IL Blitz, MA Lane, I Patrushev, JD Overton… - Cell reports, 2016 - cell.com
Transcript regulation is essential for cell function, and misregulation can lead to disease.
Despite technologies to survey the transcriptome, we lack a comprehensive understanding …

Alignment of single-cell trajectories to compare cellular expression dynamics

A Alpert, LS Moore, T Dubovik, SS Shen-Orr - Nature methods, 2018 - nature.com
Single-cell RNA sequencing and high-dimensional cytometry can be used to generate
detailed trajectories of dynamic biological processes such as differentiation or development …

Single-cell Ribo-seq reveals cell cycle-dependent translational pausing

M VanInsberghe, J van den Berg, A Andersson-Rolf… - Nature, 2021 - nature.com
Single-cell sequencing methods have enabled in-depth analysis of the diversity of cell types
and cell states in a wide range of organisms. These tools focus predominantly on …